SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3828

Length: 677 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3828 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8893	11/16
SustainPine v2.0	sp_v2.0_unigene17251	5/16

Source	Descriptions	Term	Type	Identity
AutoFact	Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 pdb\|2IX6\|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 pdb\|2IX6\|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, A	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	glutaryl- dehydrogenase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	0.0	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid metabolism	00071		87%
Blast2go	Valine, leucine and isoleucine degradation	00280		87%
Blast2go	beta-Alanine metabolism	00410		87%
Blast2go	Propanoate metabolism	00640		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Biosynthesis of secondary metabolites	01110		87%
Blast2go	Acyl-CoA oxidase.	EC:1.3.3.6	-	87%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	87%
Blast2go	alpha-Linolenic acid metabolism	00592	87%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	87%
Blast2go	Biosynthesis of plant hormones	01070	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	short-chain fatty acid metabolic process	GO:0046459	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	87%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	87%
Blast2go	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	87%
Blast2go	acyl-CoA oxidase activity	GO:0003997	Molecular Function	87%
Blast2go	peroxisome	GO:0005777	Cellular Component	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-
Sma3		IPR013764	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
72	33			66	0.997452
225		83	16		0.994512
226	83			16	0.994512
256		16		83	0.994512
295		28	71		1.0
298		71		28	1.0
307		66		33	1.0
325			42	57	1.0
343	57		42		1.0
353	12		87		0.992554
355		87	12		0.992554
358	50	50			1.0
361		50		50	1.0
370	50		50		1.0
379	44		55		1.0
384	11		88		0.923564
386		88		11	0.923564
401			42	57	1.0
406		57	42		1.0
431	42		57		1.0
432		42		57	1.0
433	57		42		1.0
446		57		42	1.0
461		66		33	1.0
519		83		16	0.994512
520	83		16		0.994512
521		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain