SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3809

Length: 539 nt

UniGene Fasta

>biog3_v1.0_unigene3809
GACAAGAACAGACATGGATCAGAAATGTTGGTCTAAGGAATTGATGTTTGGCCTATTAAATCTTGCAAGGCATAGATTGCTGAATAATGATGCAAAAGAAGCTCAGAATTTTGCAGACCAAGCACTGAAGGTAGCTTCAGATGACACAGATGTCAAGCATTGCATTAGAGAATATGCAGCACTAGCTGTCTTGGGTTCTCCTGAAGGTCTTGAAACAATAAAGAATGGTTTTGATACCAGGATGCTGCAAGTACTTGATAAGTGCTTCCAAGAATCTCAATTATTTCCTGTTGCTAAGCCGTTATCACGAGCTTTCTCTGAGAAGATCAAGAAGCCAAAAATTCGCCTTTTTATTGACAATCTCTTAGGTCCTATTCCTCTAGATTCTTCACTCTTGAACTCAGTTATAGAGACTTGGTATGGGCCATCTCTTCTACCCCGAAAGTTTGGTGCGTTGAAGGATTTAGTAGATTTTGTTGAAGGTCTTTTGGAACTTGCACCTGCTAATCTTAACTTGGTTCTCTCCATATCTAGGTTGA

Ace file of the UniGene biog3_v1.0_unigene3809

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9385	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	44%
Blast2go	uncharacterized protein	-	-	3.91803e-42	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HN84

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 179 - 652

Fln protein: TRTDMDQKCWSKELMFGLLNLARHRLLNNDAKEAQNFADQALKVASDDTDVKHCIREYAALAVLGSPEGLETIKNGFDTRMLQVLDKCFQESQLFPVAKPLSRAFSEKIKKPKIRLFIDNLLGPIPLDSSLLNSVIETWYGPSLLPRKFGALKDLVDFVEGLLELAPANLNLVLSISRL

Protein Length: 180

Fln nts: GACAAGAACAGACATGGATCAGAAATGTTGGTCTAAGGAATTGATGTTTGGCCTATTAAATCTTGCAAGGCATAGATTGCTGAATAATGATGCAAAAGAAGCTCAGAATTTTGCAGACCAAGCACTGAAGGTAGCTTCAGATGACACAGATGTCAAGCATTGCATTAGAGAATATGCAGCACTAGCTGTCTTGGGTTCTCCTGAAGGTCTTGAAACAATAAAGAATGGTTTTGATACCAGGATGCTGCAAGTACTTGATAAGTGCTTCCAAGAATCTCAATTATTTCCTGTTGCTAAGCCGTTATCACGAGCTTTCTCTGAGAAGATCAAGAAGCCAAAAATTCGCCTTTTTATTGACAATCTCTTAGGTCCTATTCCTCTAGATTCTTCACTCTTGAACTCAGTTATAGAGACTTGGTATGGGCCATCTCTTCTACCCCGAAAGTTTGGTGCGTTGAAGGATTTAGTAGATTTTGTTGAAGGTCTTTTGGAACTTGCACCTGCTAATCTTAACTTGGTTCTCTCCATATCTAGGTTGA

Fln Alignment:

Contig3809___ELMFGXXXXXXXXXXXXDAKEAQNFADQALKVASDDTDVKHCIREYAALAVLGSPEGLETIKNGFDTRMLQVLDKCFQESQLFPVAKPLSRAFSEKIKKPKIRLFIDNLLGPIPLDSSLLNSVIETWYGPSLLPRKFGALKDLVDFVEGLLELAPANLNLVLS
F6HN84_________________DAMFGLLNLSLYRLFQNDLTEARMIIDKSLKTAAPEY-FKHCVREHAMFMLT---DGSELKEDASINGMLKILKGYLSVSQNYPVSEPLSRKFIQTIKKPRVQQLISNMLSPMSSDFSLLNLVLEVWHGQSLLPQESSKLKDLVDFVEAIMEISPCNYQLAMS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain