SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3808

Length: 402 nt

UniGene Fasta

>biog3_v1.0_unigene3808
AATGTCAAGAATATGGGCTAGATATCAGTATGGAGTAGAAAAGAGTGTAGCATTGGATGGATTGACAGCAGATCAAATCACCGAAAAGGTCAAAGAATTAGTAAGAGCTGGTGCTGAAATTTCTTCTAAAACTGGATCTTGATGTTAGCATTTTTGCATGCTTACTTCCTCTCATGATATGATGTTGGTTGATGCTGATATAATTTTGGCGGATTGCTGATGTGTTTAGCTACATGCATATGAAATAAATGCATTTATCGGGGAACCACGTTCACCAGTTTCAAACCTGATGTTTTAATTACATACAATTACATCAGGAGCTTGAGCACAATTCATTGCTTGAATGGGTCTTCTGTTGCGTTAATAATTAGAATAACTTGCATTTTCGAACAAGTCTACATT

Ace file of the UniGene biog3_v1.0_unigene3808

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17824	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Arabidopsis thaliana] sp\|Q9FIJ2.1\|NDUA2_ARATH RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 dbj\|BAB11336.1\| NADH dehydrogenase 10.5K chain-like protein [Arabidopsis thalian	-	-	7.0e-27	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	nadh dehydrogenase	-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2	IPR016464	-	0.0	-
Sma3	Ribosomal protein/NADH dehydrogenase domain	IPR007741	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSY8

Fln msg: your sequence is shorter than subject: 47 - 102

Fln protein: MSRIWARYQYGVEKSVALDGLTADQITEKVKELVRAGAEISSKTGS*

Protein Length: 48

Fln nts: AATGTCAAGAATATGGGCTAGATATCAGTATGGAGTAGAAAAGAGTGTAGCATTGGATGGATTGACAGCAGATCAAATCACCGAAAAGGTCAAAGAATTAGTAAGAGCTGGTGCTGAAATTTCTTCTAAAACTGGATCTTGA___TGTTAGCATTTTTGCATGCTTACTTCCTCTCATGATATGATGTTGGTTGATGCTGATATAATTTTGGCGGATTGCTGATGTGTTTAGCTACATGCATATGAAATAAATGCATTTATCGGGGAACCACGTTCACCAGTTTCAAACCTGATGTTTTAATTACATACAATTACATCAGGAGCTTGAGCACAATTCATTGCTTGAATGGGTCTTCTGTTGCGTTAATAATTAGAATAACTTGCATTTTCGAACAAGTCTACATT

Fln Alignment:

Contig3808___RIWARYQYGVEKSVALDGLTADQITEKVKELVRAGAEISSKTGS
A9NSY8_________________RIWARYQYGVEKSVALDGLTADQITEKVKELVRAGAEISSKNGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain