SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3806

Length: 1096 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3806 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1786	39/40

Source	Descriptions	Term	Type	Identity
AutoFact	alanine aminotransferase [Oryza sativa Indica Group]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	alanine-2-oxoglutarate aminotransferase 2	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alanine--glyoxylate transaminase.	EC:2.6.1.44	-	0.0	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250		90%
Blast2go	Glycine, serine and threonine metabolism	00260		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	Gamma-glutamyltransferase.	EC:2.3.2.2	-	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Cyanoamino acid metabolism	00460		90%
Blast2go	Glutathione metabolism	00480		90%
Blast2go	Arachidonic acid metabolism	00590		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	1-aminocyclopropane-1-carboxylate synthase.	EC:4.4.1.14	-	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Cysteine and methionine metabolism	00270		90%
Blast2go	Biosynthesis of plant hormones	01070		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	Biosynthesis of secondary metabolites	01110		90%
Blast2go	Alanine transaminase.	EC:2.6.1.2	-	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250		90%
Blast2go	Carbon fixation in photosynthetic organisms	00710		90%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	Glutathione gamma-glutamylcysteinyltransferase.	EC:2.3.2.15	-	90%
Blast2go	Glycine transaminase.	EC:2.6.1.4	-	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycine, serine and threonine metabolism	00260		0.0	90%
Blast2go	Metabolic pathways	01100		0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	90%
Blast2go	1-aminocyclopropane-1-carboxylate biosynthetic process	GO:0042218	Biological Process	90%
Blast2go	glutathione catabolic process	GO:0006751	Biological Process	90%
Blast2go	photorespiration	GO:0009853	Biological Process	90%
Blast2go	alanine-glyoxylate transaminase activity	GO:0008453	Molecular Function	90%
Blast2go	gamma-glutamyltransferase activity	GO:0003840	Molecular Function	90%
Blast2go	1-aminocyclopropane-1-carboxylate synthase activity	GO:0016847	Molecular Function	90%
Blast2go	L-alanine:2-oxoglutarate aminotransferase activity	GO:0004021	Molecular Function	90%
Blast2go	glutathione gamma-glutamylcysteinyltransferase activity	GO:0016756	Molecular Function	90%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	90%
Blast2go	glycine:2-oxoglutarate aminotransferase activity	GO:0047958	Molecular Function	90%
Blast2go	peroxisome	GO:0005777	Cellular Component	90%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	90%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	90%
Blast2go	vacuole	GO:0005773	Cellular Component	90%
Blast2go	membrane	GO:0016020	Cellular Component	90%
Blast2go	apoplast	GO:0048046	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXT3

Fln msg: your sequence is shorter than subject: 290 - 480

Fln protein: LDIGELRKSVLEARYKGITVRAMVIINPGNPTGQCLSRDNIKELIEFCYVENLVLLADEVYQQNIYQDERPFVSAKKVLMDMGLPFSKELQLVSYHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKVASISLSPNVPGQVFLGLMVNPPKPADISYQMFVTESKAILESLRRRAHLMTDGFNSCRNVVCNFTEGAMYSFPQIKLPPKAIAAAKEAGKAPDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPPEEEMPEIMKSFKIFNDDFMAAYEGYSWSRL*

Protein Length: 291

Fln nts: TCTGGATATTGGGGAATTAAGAAAATCGGTTTTGGAAGCCCGTTATAAAGGAATAACTGTTCGAGCCATGGTGATTATAAATCCAGGAAATCCAACTGGTCAGTGTCTAAGCAGAGATAATATTAAGGAACTAATTGAATTTTGCTATGTTGAGAATCTGGTATTGTTAGCAGACGAGGTTTATCAACAAAATATTTATCAGGATGAGCGCCCCTTTGTAAGCGCAAAGAAGGTTTTGATGGACATGGGCTTACCTTTCAGCAAAGAACTCCAACTTGTGTCATATCATACTGTATCGAAAGGATACTGGGGTGAGTGTGGGCAGCGTGGAGGATATTTTGAAATGACAAACATTCCTCCTAAGACAGTTGATGAGATATATAAAGTGGCATCAATATCTCTAAGTCCTAATGTGCCCGGTCAAGTATTTCTAGGATTGATGGTTAATCCACCAAAACCGGCTGATATATCCTATCAGATGTTTGTCACAGAAAGCAAGGCAATACTCGAGTCACTGAGGAGAAGAGCTCACTTGATGACTGATGGATTTAATAGTTGCCGGAATGTAGTCTGCAATTTCACTGAAGGGGCTATGTACTCATTCCCACAAATAAAGTTACCACCCAAAGCTATAGCTGCTGCCAAAGAGGCTGGAAAGGCTCCAGATGTATTTTATTGTCTCAAGTTGCTAGAGGCAACAGGAATATCCACTGTCCCTGGTTCAGGATTCGGTCAAAAAGAAGGGGTTTTCCACTTGAGAACAACAATTTTACCTCCTGAAGAAGAGATGCCTGAGATAATGAAAAGTTTTAAGATTTTCAATGATGACTTCATGGCAGCATATGAAGGCTATAGTTGGTCAAGACTGTAA___AGACAACTTTCTGGGCGTTCAAACTTTCATGGAGAACACAATGCTTTATCTGCTATCTTCATATTATAATGTGGTATATTTTCAAAGTAGGCCTGCCTGGCATTATTAAAGGAAGAGACTTTGTTGTCTGTTGTGTAATTATTTGAATGGGACTATTGCCTACTCAAATTTGTTTGGTTTGGTTCAGGACTCTGGCTAACCAAACCGAATTTGCATATAAACGCT

Fln Alignment:

Contig3806___LDIGELRKSVLEARYKGITVRAMVIINPGNPTGQCLSRDNIKELIEFCYVENLVLLADEVYQQNIYQDERPFVSAKKVLMDMGLPFSKELQLVSYHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKVASISLSPNVPGQVFLGLMVNPPKPADISYQMFVTESKAILESLRRRAHLMTDGFNSCRNVVCNFTEGAMYSFXXXXXXXXXXXXXXXXXXXPDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILXXXXXXXEIMKSFKIFNDDFMAAYEGYSWSRL
A9NXT3_________________LDVGDLRKSVLEARYKGITVRAMVIINPGNPTGQCLSRDNIKELLEFCYAENLVLLADEVYQQNIYQDERPFVSAKKVLMDMGLPFSKELQLVSYHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKVASISLSPNVPGQIFLGLMVNPPKPADISYQRFVAESKAILESLRRRAHLMTDGFNNCRNVICNFTEGAMYSFPQIKLPPKAIAAAKEAGKAPDVFYCLKLLEATGMSTVPGSGFGQKEGVFHLRTTILPPEEEMPEIMNVFKIFNDDFMAKYENYSWSRL

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
72	66		33		0.997452
73			66	33	0.997452
192	11			88	0.923564
193	11	88			0.923564
195		88	11		0.923564
196		88		11	0.923564
210		66		33	1.0
372		75		25	0.996473
407	14			85	0.993533
410		85		14	0.993533
415	14			85	0.993533
416		14	85		0.993533
418			85	14	0.993533
419	85			14	0.993533
440	11	88			0.923564
441	11			88	0.923564
443			11	88	0.923564
444		88		11	0.923564
516	22		77		0.999999
520	77			22	0.999999
559	16			83	0.999991
563		83		16	0.999991
813		10		90	0.90298
816			90	10	0.90298
887	28		71		1.0
889	28		71		1.0
890		71		28	1.0
894	12			87	0.992554
895		87		12	0.992554
896		87	12		0.992554
967	12		87		0.992554
968	12			87	0.992554
970		87	12		0.992554
971		87		12	0.992554
1050	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain