SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3786

Length: 1188 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3786 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10248	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj\|BAB02018.1\| WD40-repeat protein [Arabidopsis thaliana] gb\|AAL32514.1\| WD40-repeat protein [Arabidopsis thaliana] gb\|AAM47943.1\| WD40-repeat protein [Arabidopsis thaliana] gb\|AEE76041.1\|	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	66 kda stress protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	82%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPU3

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 105 aas, putative chimeric sequence, your sequence is shorter than subject: 185 - 399

Fln protein: PSNLTENRQIRPHNPTHKPVFS*FSHTS*LISDISMAKLIETHSCVPSTERGRGILIAGDAKTNSIIYCNGRSVIMRNLDNPLEASVYGEHSYPATVARFSPNGEWVASGDTSGTVRIWGRGSDHTLKYEYKALALEGLMISSGLPMDSGSLCVETVKANQWSGLSCGTLAQMLVNLMGIQGVF*

Protein Length: 186

Fln nts: CCTTCAAATTTAACCGAAAATCGGCAGATAAGGCCCCATAATCCTACCCATAAACCTGTTTTCTCTTAATTTTCGCATACAAGTTGATTGATTTCGGATATTAGTATGGCCAAGCTCATTGAGACTCATTCCTGCGTTCCTTCAACGGAGAGGGGCCGTGGGATTCTCATAGCAGGAGATGCGAAGACGAACTCTATCATATACTGCAATGGCCGATCCGTGATCATGAGAAACCTGGACAATCCCCTGGAAGCTTCTGTTTATGGAGAACATTCATATCCTGCAACTGTGGCTCGCTTCTCACCAAATGGAGAGTGGGTTGCATCAGGGGACACTTCTGGCACAGTTCGAATCTGGGGACGAGGTTCGGATCATACTCTCAAATATGAGTACAAGGCTCTCGCTTTGGAAGGATTGATGATCTCGAGTGGTCTGCCGATGGACAGCGGATCGTTGTGTGTGGAGACAGTAAAGGCAAATCAATGGTCCGGGCTTTCATGTGGGACTCTGGCACAAATGTTGGTGAATTTGATGGGCATTCAAGGCGTGTTCTAA___GTTGTTCCTTTAAACCAACGCGACCATTCCGTGTTGCCACATGTGGAGAGGACTTCTTGGTGAACTTTTATGAAGGACCACCCTTTAGATTTAAGACATCACACAGAGATCATTCAAATTATGTGAACTGCGTAAGGTTCGCTCCAGATGGAACCAAGTTTATTACTGTTGGTTCGGATAGAAAAGGAATGATTTTTGATGGCAAGACGGGTGAAAAGATTGGGGAGTTGTCTAAAGAAGGTGGACACACGGGCAGTATTTATGCTGCTAGCTGGAGCCCTGACAGTAAACAGGTACTTACTGTGTCTGCAGACAAGTCTGCTAAAATATGGGAGATTAGTGAAACTGGTAATGGAACTGTGAAGAAAACATTGACTTTTGGAAGCCAAGGAGGAGCTGATGACATGCTAGTTGGCTGCCTTTGGTTAAATGATCATCTGATTACTGTTTCTCTTGGTGGCATCGTCAGCTTACTCTCTGCAGTTGATCCAGATAAACCACCAAAGACAATTTCTGGTCACATGAAAAGTATAAATGCAATTGCATTATATCTTCAAAGTGGACAAAGTGAGGTTTGCTCAAGCAGCTATGATGGTGTAATTGTTAGATGGATTCTGGAGTTGGTATGCTGGT

Fln Alignment:

Contig3786___MRNLDNPLEASVYGEHSYPATVARFSPNGEWVASGDTSGTVRIWG---RGSDHTLK-YEYKALALEGLMISS
B8LPU3_________________MWNADLGKCLSVYTGHSESVTCGDFTPDGKTICTGSADGSLRVWNPQTQESKLTVKGHPYHTEGLTCLNISS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1064	20		80		0.995493
1067			80	20	0.995493
1139	33		66		0.997452
1140		33		66	0.997452
1142			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain