SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3776

Length: 978 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3776

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16803	37/37

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=1 Tax=Picea sitchensis RepID=A9P1N5_PICSI	-	-	88%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	atp-dependent clp protease proteolytic subunit	-	-	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S14, ClpP	IPR001907	-	0.0	-
Sma3	Peptidase S14, ClpP, active site	IPR018215	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1N5

Fln msg:

Fln protein: MRMKVNKTCFQAISGAWNGSLAKPLRNQFNPRRSYGLIPMVIEQTSRGERAYDIFSRLLKERIICINGPIADDTASVVVAQLLFLESENPQKPINMYINSPGGVVTAGLAIYDTMQYIKSPVTTLCIGQAASMGSLLLAAGSHGERRALPNARVMIHQPSGGASGQASDIAIHAKEILKTRERLNGLYAKHTKQKIEKIEQFMDRDTFMSPDEAKEFGLIDEVIEHRPISLVTDVVTDDKKNTKEGSS*

Protein Length: 250

Fln nts: TCTGAAGAGCCTACGTTTTCGATGGGGTTCTGAGTAAAAGAAATTCGTATTACTCAGGAACTCCTATTCTTTTTCATTTGTTTTCCTCGTTGAGAGCCCCTGGTCTGCCCGTCTCGCCTCG_-_ATGAGAATGAAAGTGAACAAAACATGTTTTCAAGCGATCTCTGGAGCTTGGAATGGCTCACTTGCCAAACCCTTGAGGAATCAGTTCAATCCCAGGAGGTCATATGGCCTGATCCCCATGGTGATAGAGCAAACCTCAAGAGGCGAGAGAGCATATGACATATTCTCCAGACTTCTCAAGGAGAGGATCATATGCATAAATGGGCCCATAGCAGATGACACAGCCTCAGTGGTTGTGGCGCAGCTCCTCTTTCTCGAGTCCGAGAATCCCCAGAAGCCCATTAACATGTACATCAACTCCCCAGGTGGGGTGGTCACTGCAGGTCTTGCAATCTATGATACCATGCAGTACATAAAGTCCCCTGTGACCACACTGTGCATAGGCCAGGCTGCCTCCATGGGCTCCCTCCTGTTGGCTGCAGGGTCACATGGGGAGAGAAGGGCCCTCCCTAATGCAAGGGTCATGATCCATCAGCCCTCGGGTGGGGCTAGTGGACAAGCATCTGATATTGCAATTCATGCCAAGGAGATATTAAAGACCAGGGAGAGGCTTAATGGGCTTTATGCAAAGCACACAAAGCAGAAGATTGAGAAGATTGAGCAGTTTATGGATAGGGACACGTTCATGTCACCTGATGAGGCCAAGGAATTTGGGCTTATAGATGAAGTCATTGAGCACAGACCCATTTCATTAGTCACTGATGTTGTTACTGATGATAAGAAGAACACCAAAGAAGGGTCCAGTTAG___GGTTTGAGGTAGGGTTCAACAGCTTTTACTACAATTTTGAACCCTATGTTGGGTTTAGGTTGAATTACATGCAAATTTTTGTTTTATGATGACGTTATTTGAGTTACATT

Fln Alignment:

Contig3776___MRMKVNKTCFQAISGAWNGSLAKPLRNQFNPRRSYGLIPMVIEQTSRGERAYDIFSRLLKERIICINGPIADDTASVVVAQLLFLESENPQKPINMYINSPGGVVTAGLAIYDTMQYIKSPVTTLCIXXXXXXXXXXXXXXXHGERRALPNARVMIHQPSGGASGQASDIAIHAKEILKTRERLNGLYAKHTKQKIEKIEQFMDRDTFMSPDEAKEFGLIDEVIEHRPISLVTDVVTDDKKNTKEGSS
A9P1N5_________________MRMKVSKTCFQAISGAWNGSLGTPSMNQFNPRRSYGLIPMVIEHTSRGERAYDIFSRLLKERIICINGPIADETASVVVAQLLFLESENPQKPINMYINSPGGVVTAGLAIYDTMQYIKSPVTTLCIGQAASMGSLLLAAGSHGERRALPNARVMIHQPSGGASGQASDIAIHAKEILKTRERLNGLYAKHTGQTIEKIEQFMERDTFMSPDEAKEFGLIDEVIEHRPISLVTDSVTDDKKNNKDVSS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
624	25			75	0.996473
625	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain