SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3766

Length: 1206 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3766 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15346	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-D-glucuronate carboxy-lyase n=3 Tax=rosids RepID=B3VDY9_EUCGR	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	udp-glucuronic acid decarboxylase	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUD0

Fln msg: atg_distance in limit (1-15): atg_distance = 3,

Fln protein: MSDSSNGATTNAGSQTVPRPPPTPSPLRYSKFSQAKLRILVTGGAGFIGSHLVDRLMESGNNEVIVADNFFTGSKDNLRKWIGHPNFELIRHDVTETLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQKEEYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEELTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINLGNPGEFTMLELAEAVKELIEPSAQLKMTENTPDDPRMRKPDITKAKTLLGWEPKVSLREGLPRMAEDFRLRLNVPKK*

Protein Length: 351

Fln nts: A_-_ATGTCTGATTCATCAAATGGAGCTACTACCAATGCTGGTTCTCAGACGGTTCCTAGGCCTCCTCCAACTCCCTCGCCCTTACGTTACTCGAAATTCTCACAGGCAAAACTGCGAATTCTAGTGACAGGGGGAGCTGGCTTCATTGGATCTCATTTGGTAGATCGATTGATGGAATCTGGCAACAATGAGGTGATTGTTGCTGACAACTTCTTTACCGGATCAAAAGATAACCTCAGGAAATGGATTGGGCATCCGAATTTTGAACTCATTCGGCATGATGTGACTGAGACTCTGTTGGTAGAAGTGGATCAGATCTATCATTTGGCTTGCCCAGCATCACCTATCTTCTATAAATATAATCCTGTGAAGACAATAAAGACAAACGTGATTGGCACATTGAATATGTTGGGGCTTGCCAAGCGAGTTGGTGCAAGAATTTTGTTGACCTCAACATCTGAAGTCTATGGTGACCCTCTTGAGCATCCACAAAAGGAGGAATATTGGGGTAATGTTAACCCAATTGGAGTAAGAAGCTGCTATGATGAAGGAAAGCGTGTGGCAGAAACATTAATGTTTGACTATCACAGACAGCATGGTTTAGAGATTCGCATTGCTCGAATTTTCAATACTTATGGTCCTCGCATGAACATTGATGATGGACGTGTTGTTAGCAATTTCATTGCACAAGCACTCAGAGGTGAAGAACTGACAGTGCAAGCTCCTGGCACTCAGACCCGCAGCTTCTGCTACGTTTCTGACATGGTTGATGGCCTAATCAGACTTATGGAAGGGGAGAATACTGGGCCTATTAATCTTGGGAACCCAGGAGAATTCACAATGTTGGAACTCGCTGAAGCTGTGAAGGAGCTCATAGAGCCTTCTGCTCAGTTGAAGATGACTGAAAATACTCCAGATGATCCACGGATGAGGAAGCCTGACATAACGAAGGCGAAAACCCTTCTTGGATGGGAACCCAAGGTCTCTCTACGTGAAGGCCTACCCCGTATGGCTGAAGATTTCCGCCTGCGGTTAAATGTTCCAAAGAAGTGA___GCAGTTGCAAGGCTAGACATAATGAATGAGCCTTCCTGGATGGCTCCAATAACATTCACTTGCAATGGCAAGGGGTGGGATTTTTTTTCTTCTTTTAAATGCAGTGGATGCTTTCTTTTACCAAAAAGGAATGGATGTTGAAAAATGCGGAAAGG

Fln Alignment:

Contig3766___SDSSNGATTNAGSQTVXXXXXXXXPLRYSKFSQAKLRILVTGGAGFIGSHLVDRLMESGNNEVIVADNFFTGSKDNLRKWIGHPNFELIRHDVTETLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQKEEYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEELTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINLGNPGEFTMLELAEAVKELIEPSAQLKMTENTPDDPRMRKPDITKAKTLLGWEPKVSLREGLPRMAEDFRLRLNVPKK
A9NUD0_________________ADSSNGATTNASSQAVPRPPPTPSPLRYSKFSQAKLRILVTGGAGFIGSHLVDRLMESGNNEVIVADNFFTGSKDNLRKWIGHPNFELIRHDVTETLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQKEEYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEELTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINLGNPGEFTMLELAEAVKELIEPSAQLKITENTPDDPRMRKPDITKAKTLLGWEPKVSLREGLPRMAEDFRLRLNVPKK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain