SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3764

Length: 1075 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3764 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25320	9/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone H1-like protein [Zea mays] gb\|ACN27409.1\| unknown [Zea mays]	-	-	2.00386e-43	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	single myb histone	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	66%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	66%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	66%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	66%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	66%
Blast2go	response to salt stress	GO:0009651	Biological Process	66%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
284	25		75		0.996473
289	75			25	0.996473
354	33			66	0.997452
699	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
887	899	TTC TTC TTC TTC T	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain