SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3739

Length: 309 nt

UniGene Fasta

>biog3_v1.0_unigene3739
AATGTTTCAATGATAAGTGCATACTGCTATGCTGGTAGAATGGACGATTGCTACCGTATTTTCGATGGAATGGTGTTCAATGGTGCGTTTCCTGATTCTGTAACTTACAATACTATTTTCCAAACCCTTATGAAGACACGACAAATGGAGGAAGCTGCCAGCATATTTCGCGAGATGACTAGAAATGAGTATGATCCAGATAGCGATAGTTTTACGATGGCCGTAGTCGTGAAAGATCTAAATATAGCCTCAATGGTTTGGAAACACATGAGCAGCAAGGGTGTTTTCCCTAGCATGGAGTCTGTCATT

Ace file of the UniGene biog3_v1.0_unigene3739

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6222	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S1R1_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	60%

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLL9

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 103 - 524

Fln protein: NVSMISAYCYAGRMDDCYRIFDGMVFNGAFPDSVTYNTIFQTLMKTRQMEEAASIFREMTRNEYDPDSDSFTMAVVVKDLNIASMVWKHMSSKGVFPSMESVI

Protein Length: 104

Fln nts: AATGTTTCAATGATAAGTGCATACTGCTATGCTGGTAGAATGGACGATTGCTACCGTATTTTCGATGGAATGGTGTTCAATGGTGCGTTTCCTGATTCTGTAACTTACAATACTATTTTCCAAACCCTTATGAAGACACGACAAATGGAGGAAGCTGCCAGCATATTTCGCGAGATGACTAGAAATGAGTATGATCCAGATAGCGATAGTTTTACGATGGCCGTAGTCGTGAAAGATCTAAATATAGCCTCAATGGTTTGGAAACACATGAGCAGCAAGGGTGTTTTCCCTAGCATGGAGTCTGTCATT

Fln Alignment:

Contig3739___SMISAYCYAG--RMDDCYRIFDGMVFNGAFPDSVTYNTIFQTLMKTRQMEEAASIFREMTRNEYDPDSDSFTMAVVV----KDLNIASMVWKHMSSKGVFPSME
B8LLL9_________________TMIGVFCSANPIQVDFAYRLLDEMVFTGIFPDFKTYNTIFEALITARKVEEASSIFREMTKNDFCPLYANYVMAIKMYFEADDPEMAVMMWKHMIQKAIFPKSD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
306	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain