SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3717

Length: 1498 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3717

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16270	1/27
SustainPine v2.0	sp_v2.0_unigene25948	26/27

Source	Descriptions	Term	Type	Identity
AutoFact	cysteine desulfurase 1 [Arabidopsis thaliana] sp\|O49543.1\|NFS1_ARATH RecName: Full=Cysteine desulfurase 1, mitochondrial; AltName: Full=Protein AtMtNifS; Flags: Precursor gb\|AAK00758.1\|AF229854_1 cysteine desulfurase [Arabidopsis thaliana] emb\|CAA16686.1\|	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	cysteine desulfurase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cysteine desulfurase.	EC:2.8.1.7	-	0.0	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Thiamine metabolism	00730		0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	90%
Blast2go	cysteine desulfurase activity	GO:0031071	Molecular Function	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Cysteine desulfurase	IPR010240	-	-
Sma3	Cysteine desulfurase, NifS	IPR016454	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA74

Fln msg: STOP codon was not found. Distance to subject end: 12 aas,

Fln protein: MASKLLTMASRRAARTLTSGSPAARSLVNGHTAASFSTAAARAEEETVEETVEGITMKGVKIAGRPLYLDMQATSPVDPRVLDTMLPYYMYQYGNPHSRTHLFGWESDRAVEKAREQVAALIGASPKEIIFTSGATESNNISVKGVMHFFKDKKRHVITTQTEHKCVLDSCRHLQQEGFDVTYLPVKKDGLIDIDELRAAIRPDTGLVSVMTVHNEIGVIQPIAEIGEICRQNKIFLHTDAAQAAGKIPVNVDEMKVDLMSLSGHKIYGPKGIGALYMRRRPRVRVEPQMNGGGQERGIRSGTVATPLAVGMGAACELAMKEMAYDQSHVSALQERLLSGITAQLDGVEINGSAERRYAGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTPQEIDRTIKLTVDQVQKLREMSPLWEMVT

Protein Length: 453

Fln nts: TATTTGTTAGACTACGGCCCTACATTATAAAGGAAACCTCACAAATACATTTTGTTGCAGCAGCACTGTTCAAACACCAACTGTAATCTTCGAACCCCGACACTTCATATTTTCAGACTACAGACTTCGGTAGCTCGGCA_-_ATGGCGTCGAAGCTCCTAACAATGGCGTCAAGAAGGGCCGCCAGAACTCTCACCAGTGGCAGCCCGGCCGCCAGATCTCTTGTCAATGGCCACACGGCTGCCTCTTTCTCAACGGCGGCAGCGAGAGCAGAAGAAGAAACGGTGGAGGAAACTGTGGAAGGAATCACAATGAAGGGCGTCAAGATAGCAGGCCGGCCCCTGTATCTCGACATGCAGGCAACATCCCCAGTCGATCCTAGGGTTCTGGACACCATGCTGCCGTATTACATGTACCAATACGGAAACCCTCATTCTCGAACCCATCTCTTCGGCTGGGAATCCGATAGAGCCGTGGAAAAGGCCAGAGAGCAGGTGGCCGCCCTTATCGGCGCGAGCCCTAAAGAAATAATCTTTACCTCGGGTGCCACTGAATCGAACAACATATCCGTCAAGGGTGTGATGCATTTCTTCAAAGACAAGAAAAGACACGTCATCACTACGCAGACGGAGCACAAGTGCGTCCTGGACTCATGCCGACACTTGCAGCAGGAGGGTTTCGATGTCACCTACTTACCCGTGAAAAAAGACGGCCTCATAGACATCGACGAGCTGAGGGCCGCCATCAGGCCCGACACAGGTTTGGTCTCTGTCATGACTGTTCATAACGAAATTGGTGTGATTCAGCCTATTGCAGAAATAGGTGAAATATGTAGGCAAAACAAAATTTTCCTTCACACTGATGCGGCTCAGGCCGCTGGTAAAATTCCTGTCAATGTCGATGAGATGAAAGTGGATTTGATGTCATTGAGTGGGCACAAGATTTATGGGCCTAAGGGAATTGGGGCTCTGTATATGCGCCGCAGGCCCAGGGTTCGAGTCGAGCCGCAAATGAACGGCGGAGGGCAGGAGAGGGGGATCAGAAGTGGCACAGTAGCGACGCCGTTGGCTGTCGGCATGGGCGCTGCCTGTGAGTTGGCGATGAAAGAGATGGCTTATGACCAGAGTCATGTATCGGCGCTGCAGGAGCGATTGTTGAGTGGGATTACGGCGCAGCTTGATGGTGTTGAGATCAATGGGAGCGCGGAGCGTCGTTATGCGGGGAATCTCAATCTGTCTTTTGCTTATGTAGAGGGGGAGAGCCTTCTCATGGGTCTCAAGGAGGTTGCTGTCTCGAGCGGCAGCGCGTGCACGAGTGCCAGTCTTGAGCCCTCTTATGTTTTGAGGGCTTTGGGGGTTGAAGAAGACATGGCTCATACTTCTATTAGATTTGGGATTGGAAGGTTCACCACGCCACAAGAGATCGATAGAACCATTAAGCTTACAGTTGATCAGGTTCAGAAGCTGAGAGAGATGAGTCCGTTGTGGGAAATGGTGACATT

Fln Alignment:

Contig3717___MASKLLTMASRRAARTLTSGSPAARSLVNGHXXXXXXXXXXXXXXXXXXXXXXGITMKGVKIAGRPLYLDMQATSPVDPRVLDTMLPYYMYQYGNPHSRTHLFGWESDRAVEKAREQVAALIGASPKEIIFTSGATESNNISVKGVMHFFKDKKRHVITTQTEHKCVLDSCRHLQQEGFDVTYLPVKKDGLIDIDELRAAIRPDTGLVSVMTVHNEIGVIQPIAEIGEICRQNKIFLHTDAAQAAGKIPVNVDEMKVDLMSLSGHKIYGPKGIGALYMRRRPRVRVEPQMNGGGQERGIRSGTVATPLAVGMGAACELAMKEMAYDQSHVSALQERLLSGITAQLDGVEINGSAERRYAGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTPQEIDRTIKLTVDQVQKLREMSPLWEMV
D5AA74_________________MASKLLSMASRRAARTL----------VNGRLAASFSTAAARAVEETVEETVEGITMKGVKIAGRPLYLDMQATSPVDPRVLDAMMPFYMYQYGNPHSRTHLFGWESDTAVEKAREQVASLIGASPKEIIFTSGATESNNISIKGVMHFFKDKKRHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKKDGLIDIDELKAAIRPDTGLVSVMTVHNEIGVIQPIEEIGEICRQNKIFLHTDAAQAAGKIPVNVDEMKVDLMSLSGHKIYGPKGIGALYMRRRPRVRVEPQMNGGGQERGIRSGTVPTPLAVGMGAACELAMKEMAYDQRHVSALQERLLSGIKGQLDGVEINGSAERRYAGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTPQEIDRTIKLTVDQVQKLREMSPLWEMV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
938	20		80		0.995493
939	80	20			0.995493
941			20	80	0.995493
1043			80	20	0.995493
1201	16	83			0.994512
1202	16		83		0.994512
1203		83		16	0.994512
1204	16		83		0.994512
1205			66	33	1.0
1206	83			16	0.994512
1370			66	33	0.997452
1445	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain