SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3703

Length: 737 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3703 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2321	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-6-phosphate 1-dehydrogenase (Fragment) n=1 Tax=Vitis vinifera RepID=D7UA79_VITVI	-	-	80%
FL-Next	sp=Glucose-6-phosphate 1-dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	glucose-6-phosphate 1-dehydrogenase chloroplastic-like	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glucose-6-phosphate dehydrogenase.	EC:1.1.1.49	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	85%
Blast2go	Glutathione metabolism	00480	85%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	85%
Blast2go	Biosynthesis of plant hormones	01070	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	glucose metabolic process	GO:0006006	Biological Process	85%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	85%
Blast2go	NADP binding	GO:0050661	Molecular Function	85%
Blast2go	glucose-6-phosphate dehydrogenase activity	GO:0004345	Molecular Function	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Glucose-6-phosphate dehydrogenase	IPR001282	-	-
Sma3	6-phosphogluconate dehydrogenase, C-terminal	IPR006114	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
215	20	80			0.995493
218	80		20		0.995493
219			80	20	0.995493
220	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain