SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3684

Length: 934 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3684 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2132	14/19
SustainPine v2.0	sp_v2.0_unigene17810	5/19

Source	Descriptions	Term	Type	Identity
AutoFact	Diacylglycerol kinase, alpha, putative n=1 Tax=Ricinus communis RepID=B9RW81_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	diacylglycerol kinase 5	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Diacylglycerol kinase.	EC:2.7.1.107	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Glycerolipid metabolism	00561	79%
Blast2go	Glycerophospholipid metabolism	00564	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Phosphatidylinositol signaling system	04070	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	0.0	79%
Blast2go	diacylglycerol kinase activity	GO:0004143	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Diacylglycerol kinase, plant	IPR016961	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
551	33			66	0.997452
552	33	66			0.997452
554		66	33		0.997452
555	66			33	0.997452
580	25			75	0.996473
600	14	85			0.993533
601			85	14	0.993533
674		71	28		1.0
720	20	80			0.995493
722	20			80	0.995493
723		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain