SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3650

Length: 949 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3650 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18396	11/12

Source	Descriptions	Term	Type	Identity
AutoFact	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gb\|AAT68379.1\| hypothetical protein At3g25950 [Arabidopsis thaliana] gb\|AAT69230.1\| hypothetical protein At3g25950 [Arabidopsis thaliana] gb\|AEE77094.1\| TRAM, LAG1 an	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	TRAM/LAG1/CLN8 homology domain	IPR006634	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
407	75		25		0.996473
408		75		25	0.996473
558	75			25	0.996473
572	75			25	0.996473
577		33	66		0.997452
579		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain