SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3612

Length: 492 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3612
AATGTAATCAGGGTACAATTTAGACATGTTCCGGGGAATCTATACAAAAGAAACTTTGGAACCGATTTGGATCAAGCTACTAATGAGCTTGTTATCCGGGTACAACCTGATGAAGCTATTTACCTTAAAATTAACAATAAGATTCCAGGCCTGGGCATGAGACTAGATCGGAGTAATTTGAATCTTCACTATGCGGCAAGGTATTCAAGTGAAATTCCTGATGCTTATGAGCGACTGCTTTTAGATGCAATTGAAGGGGAACGGCGCCTGTTCATTAGAAGTGACGAGCTTGATGCAGCATGGTCTCTATTTACACCATTGCTAAAAGAATTAGAATCAAGGAAGGTTGCACCTGAGCTTTATCCATATGGCAGTCGAGGCCCTGTGGGAGCTCATTACCTGGCAGCCAAATACAATGTTCGATGGGGCGATATCAGTGGAGAGCTGCGGGAGCAATGATTACTATCCTGTGATCTGTACTTGAGGCACATT

Ace file of the UniGene biog3_v1.0_unigene3612 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2079	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-6-phosphate 1-dehydrogenase n=3 Tax=Andropogoneae RepID=C5YD77_SORBI	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	glucose-6-phosphate 1- chloroplastic-like	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glucose-6-phosphate dehydrogenase.	EC:1.1.1.49	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	86%
Blast2go	Glutathione metabolism	00480	86%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	86%
Blast2go	Biosynthesis of plant hormones	01070	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	glucose metabolic process	GO:0006006	Biological Process	86%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	86%
Blast2go	NADP binding	GO:0050661	Molecular Function	86%
Blast2go	glucose-6-phosphate dehydrogenase activity	GO:0004345	Molecular Function	86%
Blast2go	plastid	GO:0009536	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glucose-6-phosphate dehydrogenase	IPR001282	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSM1

Fln msg: your sequence is shorter than subject: 153 - 235

Fln protein: NVIRVQFRHVPGNLYKRNFGTDLDQATNELVIRVQPDEAIYLKINNKIPGLGMRLDRSNLNLHYAARYSSEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPLLKELESRKVAPELYPYGSRGPVGAHYLAAKYNVRWGDISGELREQ*

Protein Length: 154

Fln nts: AATGTAATCAGGGTACAATTTAGACATGTTCCGGGGAATCTATACAAAAGAAACTTTGGAACCGATTTGGATCAAGCTACTAATGAGCTTGTTATCCGGGTACAACCTGATGAAGCTATTTACCTTAAAATTAACAATAAGATTCCAGGCCTGGGCATGAGACTAGATCGGAGTAATTTGAATCTTCACTATGCGGCAAGGTATTCAAGTGAAATTCCTGATGCTTATGAGCGACTGCTTTTAGATGCAATTGAAGGGGAACGGCGCCTGTTCATTAGAAGTGACGAGCTTGATGCAGCATGGTCTCTATTTACACCATTGCTAAAAGAATTAGAATCAAGGAAGGTTGCACCTGAGCTTTATCCATATGGCAGTCGAGGCCCTGTGGGAGCTCATTACCTGGCAGCCAAATACAATGTTCGATGGGGCGATATCAGTGGAGAGCTGCGGGAGCAATGA___TTACTATCCTGTGATCTGTACTTGAGGCACATT

Fln Alignment:

Contig3612___IRVQFRHVPGNLYKRNFGTDLDQATNELVIRVQPDEAIYLKINNKIPGLGMRLDRSNLNLHYAARYSS-EIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPLLKELESRKVAPELYPYGSRGPVGAHYLAAKYNVR
C0PSM1_________________IRVQFRDVPGDIFKCN-----KHGRNEFVIRLQPLEAMYMKLMVKKPGLEMSTTQSELDLSYQQRYQDIAIPEAYERLILDTIRGDQQHFVRRDELKVAWEIFTPLLNRIDNGEIKPCPYTPGSRGPKEADELAARVGYR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
378	80	20			0.995493
381	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain