SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3590

Length: 1200 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3590 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8459	30/30

Source	Descriptions	Term	Type	Identity
AutoFact	AUX/IAA protein n=4 Tax=Solanum RepID=Q45UB0_SOLLC	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	aux iaa protein	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	62%
Blast2go	regulation of cellular process	GO:0050794	Biological Process	62%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	62%
Blast2go	nucleus	GO:0005634	Cellular Component	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	AUX/IAA protein	IPR003311	-	0.0	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVH5

Fln msg: Overlapping hits, possible frame ERROR between 393 and 384, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 219 - 390

Fln protein: NVYWCE*CNGNCKSIVMNDGGCSSSIGKEAAGQSKVAVQERPSQHGSSQNQGSAAAEVPPASKAQVVGWPPIRSFRKNTLAANSKSSDEGEGKPGSNALYVKVSMDGAPYLRKVDLKLYNRYQELSSxxxxxFSGFTIGQYGSHGLPGRDSLSESKLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSDAIGLAPRAMEKCKSRS*

Protein Length: 220

Fln nts: AATGTCTACTGGTGTGAGTAATGTAATGGAAATTGCAAGTCTATTGTTATGAATGATGGGGGTTGTTCCTCATCAATTGGGAAAGAAGCAGCGGGGCAGTCCAAGGTAGCAGTGCAGGAGAGACCTTCCCAGCATGGATCCAGCCAGAATCAGGGTTCGGCAGCAGCTGAGGTGCCACCTGCATCCAAAGCTCAGGTGGTAGGATGGCCGCCAATCCGATCTTTCAGGAAGAATACTTTAGCTGCAAATTCAAAATCTTCAGATGAAGGCGAGGGAAAGCCTGGCTCAAATGCCTTGTACGTTAAAGTCAGCATGGATGGAGCTCCATATTTGAGAAAGGTTGACTTAAAACTGTACAATAGGTACCAGGAGCTCTCCTCTxxxxxxxxxxxxxxxTTTAGCGGTTTTACCATTGGTCAATATGGCTCTCATGGCCTACCTGGAAGGGATAGTTTGAGTGAGAGCAAGTTGATGGACCTGCTGCATGGGTCAGAATATGTGCTTACTTATGAGGACAAGGATGGTGATTGGATGCTTGTTGGAGATGTTCCCTGGGAGATGTTTGTCGATTCATGTAAGAGACTTCGAATAATGAAGGGGTCAGATGCAATTGGCCTTGCTCCCAGGGCCATGGAAAAATGTAAAAGTAGGAGCTAAAGCTCAAGCATGACCTGTTCTCTGGACTCTGTGGGCATATGGATTGGGTACGAGTTGGTGGATGTGGAGTTAGATGAAGTCGAGTATGTTTCTCATTCAATTGCAGCAGAAACAGGGCCAACAGAAAGGCTAATTAATTTCTTATCAGCATTCAGACTTGCCAACTTCATGGTTATAATTACCATATTCACTTCAGCTGGATTATAGTCACTGGTCCTTTGTTATTAGAATCGATTTTTATTTTCTGGAAATGATTGGAAGATGGCACATGTAATGAGACGATATGCACAGGTCAGAAGCAGGTCTCGTATACTTGGGAAGGCAGTATTATGGGAGAGGATACCATCAGGAACAGTGAGAGTCCTTCTATGATGCTTTCTTTTAAGTTTTAATTAAACTTTGTGAAAACTGAACTCCGTCGGTCTAAAAAAAGTGACTTGGAAGCACAGCCCTGGTTCTCTATAATAACTACATTGTGTTGGATCTGAGCATTCTTACAGCTTAGGAGCCATGTCTACATCAACAGTGGGGAAGGTGGTAATTG

Fln Alignment:

Contig3590___NGNCKSIVMNDGGCSSSIGKEAAGQSKVAVQERPSQHGSSQNQGSAAAEVPPASKAQVVGWPPIRSFRKNTLAANSKSSDEGEGKPGSNALYVKVSMDGAPYLRKVDLKLYNRYQELSSAxxxMFSGFTIGQYGSHGLPGRDSLSESKLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSDAIGLAPRAMEKCK
A9NVH5_________________NGNAKSIVMNDGGCSSSIGKEAAGQSKVAAQERPSQHGSSQNQSSAAVEAPPASKAQVVGWPPIRSFRKNTLAANSKPADDSEGKPGSNALYVKVSMDGAPYLRKVDLKMYNRYQELSSAxxxMFSGFTIGQYGSHGIPGRDGLSESKLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSDAIGLAPRAMEKCK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
108	33		66		0.997452
111	66		33		0.997452
113		33		66	0.997452
169	80			20	0.995493
265	16	83			0.994512
266	16		83		0.994512
268		83	16		0.994512
335			85	14	0.993533
420	16	83			0.994512
421	16	83			0.994512
423			16	83	0.994512
449	14			85	0.993533
452	85			14	0.993533
460	88			11	0.923564
461		88	11		0.923564
462	88			11	0.923564
550	12			87	0.992554
552			87	12	0.992554
553		87	12		0.992554
734	10			90	0.90298
797		25	75		0.996473
798	25		75		0.996473
800	75			25	0.996473
1157	33			66	0.997452
1161	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain