SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3568

Length: 485 nt

UniGene Fasta

>biog3_v1.0_unigene3568
AATGTAAAAGGAATGCCATCTATGCAGTACACATGGAATACGGTTTGAAGCCCTTAGCCACCCGCATAGACTATCTGGCAGAATTTTCTGTAACAATGCCCATTTTGAGCTTTACGGCCACAAGTGAGAATGTCGCGGATGGGGAAGGAACAATTCAAATCTATTGTGTTCAAACCCAGGCCATTCAACAATATGCACTTGAGTTGTCTCAATGCTTTCCACCACCTGTAGAGCTTGGATCTTTGGATGAGGACACCGCGTCACATGTCTTTGAGAGATCCACCTTATCTGCTTTCACACCTGTAGAACCCAGCATCAGTTCAGGTGCCAAGTCGCCAAGGTCTACCAATGTTACTGATAAGGTGTCTACATACAGAAGCCCAGTTTTCCCAACAACTGTGGACCCTTCCCATTCACATGATCAACTTGCAGTGTCATCTGCTGGCACTACATTTGGCCTTTCAATGCCTATGAATGTTCACATT

Ace file of the UniGene biog3_v1.0_unigene3568

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3989	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	WS0348.C21_I08 WS-SE-N-A-19 Picea glauca cDNA clone WS0348_I08 3, mRNA sequence.	-	-	72%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	59%
Blast2go	enhancer of mrna-decapping protein 4-like	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Protamine P1	IPR000221	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9GWQ7

Fln msg: STOP codon was not found. Distance to subject end: 27 aas, your sequence is shorter than subject: 161 - 182

Fln protein: CKRNAIYAVHMEYGLKPLATRIDYLAEFSVTMPILSFTATSENVADGEGTIQIYCVQTQAIQQYALELSQCFPPPVELGSLDEDTASHVFERSTLSAFTPVEPSISSGAKSPRSTNVTDKVSTYRSPVFPTTVDPSHSHDQLAVSSAGTTFGLSMPMNVHI

Protein Length: 162

Fln nts: AATGTAAAAGGAATGCCATCTATGCAGTACACATGGAATACGGTTTGAAGCCCTTAGCCACCCGCATAGACTATCTGGCAGAATTTTCTGTAACAATGCCCATTTTGAGCTTTACGGCCACAAGTGAGAATGTCGCGGATGGGGAAGGAACAATTCAAATCTATTGTGTTCAAACCCAGGCCATTCAACAATATGCACTTGAGTTGTCTCAATGCTTTCCACCACCTGTAGAGCTTGGATCTTTGGATGAGGACACCGCGTCACATGTCTTTGAGAGATCCACCTTATCTGCTTTCACACCTGTAGAACCCAGCATCAGTTCAGGTGCCAAGTCGCCAAGGTCTACCAATGTTACTGATAAGGTGTCTACATACAGAAGCCCAGTTTTCCCAACAACTGTGGACCCTTCCCATTCACATGATCAACTTGCAGTGTCATCTGCTGGCACTACATTTGGCCTTTCAATGCCTATGAATGTTCACATT

Fln Alignment:

Contig3568___KRNAIYAVHMEYGLKPLATRIDYLAEFSVTMPILSFTATSENVADGEGTIQIYCVQTQAIQQYALELSQCFPPPVELGSLD--EDTASHVFERSTLSAFTPVEPS
B9GWQ7_________________KKNAIYVVHLEYGPYPAATRMDYIAEFTVTMPILSLTGTSDSLPNGEHIVQVYCVQTQAIQQYALNLSQCLPPPLENMELERTESNVSHAFDASNSDGSTIMESS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
375	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain