SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3566

Length: 560 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3566
AATGTCCTGTGTAGATGTGTTGGGAGGGTTGGTGCACGTGGGCCTTGGAGATCCTGTGGTGAACCAGTGCTGCCCCGTGTTGCAGGGCGTGCTTGCTTTGGAGGCGGCTGTGTGTTTGTGTACCACTATCAAAGCCAGCCTTCTTAATCTCAATATCGTTCTTCCCTTGGCTCTTGAGCTGCTTGCCAGCTGCGGAAAGAGCCCCCCTCTGGATTCACCTGCCCATAGTCCTCAACAAGGTAACCATGGCTCTGAACGTCTGGATCCAAGCGATAAATATTTGCATAGGAGACCTCTCCATTCATGAGCTTTAAATCATTCATTTGTATTAGAACCAGGCCGTCTTTTCACTGCTTCTCGTTTACTACTCGTAATGCCTGTGCAATCATGTTTCTCAGTACAAAATGCATTTTATTGCTGTAGTTAGGAACTGTCGTATTTGTCGAATAAAGTTGCGGTATTTGATTTAAATAGACTTGTAATTCATTTCAGATTGTATTGTATTGTTTGTTGTAATGGCTTTCACTGTTGTACTTAGTTCCCCATTTTCTGTAACTGTT

Ace file of the UniGene biog3_v1.0_unigene3566 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17162	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tryp_alpha_amyl multi-domain protein	-	-	1.0e-14	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	lipid binding	-	-	1.06045e-19	89%

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3		IPR003267	-	-
Sma3		IPR003612	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTT1

Fln msg: your sequence is shorter than subject: 102 - 197

Fln protein: MSCVDVLGGLVHVGLGDPVVNQCCPVLQGVLALEAAVCLCTTIKASLLNLNIVLPLALELLASCGKSPPLDSPAHSPQQGNHGSERLDPSDKYLHRRPLHS*

Protein Length: 103

Fln nts: AATGTCCTGTGTAGATGTGTTGGGAGGGTTGGTGCACGTGGGCCTTGGAGATCCTGTGGTGAACCAGTGCTGCCCCGTGTTGCAGGGCGTGCTTGCTTTGGAGGCGGCTGTGTGTTTGTGTACCACTATCAAAGCCAGCCTTCTTAATCTCAATATCGTTCTTCCCTTGGCTCTTGAGCTGCTTGCCAGCTGCGGAAAGAGCCCCCCTCTGGATTCACCTGCCCATAGTCCTCAACAAGGTAACCATGGCTCTGAACGTCTGGATCCAAGCGATAAATATTTGCATAGGAGACCTCTCCATTCATGA___GCTTTAAATCATTCATTTGTATTAGAACCAGGCCGTCTTTTCACTGCTTCTCGTTTACTACTCGTAATGCCTGTGCAATCATGTTTCTCAGTACAAAATGCATTTTATTGCTGTAGTTAGGAACTGTCGTATTTGTCGAATAAAGTTGCGGTATTTGATTTAAATAGACTTGTAATTCATTTCAGATTGTATTGTATTGTTTGTTGTAATGGCTTTCACTGTTGTACTTAGTTCCCCATTTTCTGTAACTGTT

Fln Alignment:

Contig3566___NQCCPVLQGVLALEAAVCLCTTIKASXXXXXXXXXXXXXXLASCGKSPP
A9NTT1_________________NQCCPLLQGVLSLEAALCLCTTIKAKLLNLNIILPLALELLVFCGNSPP

SSRs (tot: 1)

Start position	End position	Sequence	Length
54	68	ACAAT ACAAT ACAAT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain