SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3556

Length: 410 nt

UniGene Fasta

>biog3_v1.0_unigene3556
AATGTGTGTAATCCATGATCACATGAGTACTTTTGAACCACAAGCTCCAGCTAATGGGTCTTTACCTGCACAAAATGACATGCACTCAATGTTTCCTGTACATGCAAAAGTAAATGGTCCTTATGCTGGTAATGGGGTAGAAGAGACTACAGGGCTTCGATCCGTGAAAGATAAAGATCAAACACCAAGAGATACTGCACGGAATTATCCTTATTTGCCAATGCTACCGGAAGAGTCAAACACGTATATTTCAGAAGAAGATGATCTTCTGCCTGCGATAGAAAATTTCCAAATTACTGGTGAACCTGTACCAGGGAATACATTAGAAGCATCTGGAATTTCTATCAATGGCACCTCTCTTTGTGTTTTCAGTGGTTTCGTCACTTTGAAGATGGCACTGACTGCACATT

Ace file of the UniGene biog3_v1.0_unigene3556

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14441	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	56%
Blast2go	uncharacterized protein	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	NADH-ubiquinone reductase complex 1 MLRQ subunit	IPR010530	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F2E8U7

Fln msg: Overlapping hits, possible frame ERROR between 370 and 367, Distance to subject end: 172 aas, your sequence is shorter than subject: 136 - 745

Fln protein: MCVIHDHMSTFEPQAPANGSLPAQNDMHSMFPVHAKVNGPYAGNGVEETTGLRSVKDKDQTPRDTARNYPYLPMLPEESNTYISEEDDLLPAIENFQITGEPVPGNTLEASGISINGTSLCxxxWFRHFEDGTDCT

Protein Length: 137

Fln nts: AATGTGTGTAATCCATGATCACATGAGTACTTTTGAACCACAAGCTCCAGCTAATGGGTCTTTACCTGCACAAAATGACATGCACTCAATGTTTCCTGTACATGCAAAAGTAAATGGTCCTTATGCTGGTAATGGGGTAGAAGAGACTACAGGGCTTCGATCCGTGAAAGATAAAGATCAAACACCAAGAGATACTGCACGGAATTATCCTTATTTGCCAATGCTACCGGAAGAGTCAAACACGTATATTTCAGAAGAAGATGATCTTCTGCCTGCGATAGAAAATTTCCAAATTACTGGTGAACCTGTACCAGGGAATACATTAGAAGCATCTGGAATTTCTATCAATGGCACCTCTCTTTGTxxxxxxxxxTGGTTTCGTCACTTTGAAGATGGCACTGACTGCACATT

Fln Alignment:

Contig3556___PRDTARNYPYLPMLPEESNTYISE--EDDLLPAIENFQITGEPVPGNTLEASGISINGTSLCVxQWFRHFEDGT
F2E8U7_________________PDDGNLPYPYLPTVLEEPSTSFSEVAEDDPLPAIDGLRITGEAFPGKELQASGYSINGTTSCNxEWVRHLEDGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain