SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3544

Length: 1571 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3544

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4514	40/70
SustainPine v2.0	sp_v2.0_unigene15325	1/70
SustainPine v2.0	sp_v2.0_unigene29055	28/70

Source	Descriptions	Term	Type	Identity
AutoFact	Uridylate kinase plant, putative n=1 Tax=Ricinus communis RepID=B9SKI0_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	uridylate kinase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylate kinase.	EC:2.7.4.3	-	0.0	89%

Source	KEGGs	Term	Type	Identity
Blast2go	Purine metabolism	00230		89%
Blast2go	Metabolic pathways	01100		89%
Blast2go	Biosynthesis of secondary metabolites	01110		89%
Blast2go	Uridine kinase.	EC:2.7.1.48	-	89%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		89%
Blast2go	Drug metabolism - other enzymes	00983		89%
Blast2go	Metabolic pathways	01100		89%
Blast2go	Cytidylate kinase.	EC:2.7.4.14	-	89%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		89%
Blast2go	Metabolic pathways	01100		89%
Blast2go		EC:2.7.4.1-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide biosynthetic process	GO:0009165	Biological Process	89%
Blast2go	pyrimidine ribonucleoside monophosphate metabolic process	GO:0009173	Biological Process	89%
Blast2go	nucleotide phosphorylation	GO:0046939	Biological Process	89%
Blast2go	adenylate kinase activity	GO:0004017	Molecular Function	89%
Blast2go	uridylate kinase activity	GO:0009041	Molecular Function	89%
Blast2go	uridine kinase activity	GO:0004849	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	cytidylate kinase activity	GO:0004127	Molecular Function	89%
Blast2go	nucleoside triphosphate adenylate kinase activity	GO:0046899	Molecular Function	89%
Blast2go	cytoplasm	GO:0005737	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Adenylate kinase	IPR000850	-	0.0	-
Sma3	UMP-CMP kinase	IPR006266	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A874

Fln msg: your sequence is longer than subject: 298 - 223

Fln protein: MGGWHRLRLRTLSRSNLFLVSSGVRFPYSAFSITNQGKKAAILEIFGSYFLPGEDSNSAYRSQAQFWFHSKSNFMTTEMAEAPTASVLEKKDNGVVSEEKKLHVVFVLGGPGSGKGTQCEKIVENFGFTHLSAGDLLRAELKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMHESENDKFLIDGFPRNEENRAAFENVTGIQPDFILFFDCPEEEMSRRLLNRNQGRVDDNIETITKRFKVFSESSLPVVNYYDSKGKVRKIDAVKTREDIFEDIKLLFATYIQEKEEVKVGSLN*

Protein Length: 299

Fln nts: GCTTATTAAGAACCCTAAACTACTGGGTAATTTTCTTTGTCCCTGATCCACCCGCCAATTTTTCTTTACCTCACAATCATCCTGCGTTATTATTATTATTTGAAGTGCAAATTCCGAAATTCCGAAATTCTTCCGAAGATTACGCATCATAGAGAAAATCCCAAATGAACTGTTACAGAAAAGGTTGCTTACTTGACGGGGTGTTGGGTATGGTGTTCAATATAAATACAAGTGAAGGCCAGCTATTCCGAGC_-_ATGGGAGGCTGGCATCGTCTGAGATTACGGACGTTGTCGAGATCCAATCTCTTCCTGGTTTCATCTGGTGTCCGTTTTCCATATTCTGCCTTTTCAATTACAAATCAGGGAAAAAAGGCAGCCATACTTGAAATCTTTGGCAGCTATTTTCTGCCAGGTGAAGACAGCAATTCTGCATACAGAAGCCAGGCACAATTTTGGTTCCATTCCAAGTCAAACTTCATGACCACTGAGATGGCAGAAGCTCCTACAGCTTCAGTATTGGAAAAGAAGGATAATGGAGTTGTGTCTGAGGAGAAAAAGCTCCATGTTGTTTTTGTTTTGGGTGGGCCAGGAAGTGGAAAGGGTACTCAGTGCGAAAAGATTGTTGAAAATTTTGGGTTTACACACCTAAGTGCTGGGGATCTTCTGCGTGCTGAGCTTAAATCAGGCTCAGAAAATGGAACGATGATTGAGAATATGATAAAGGAAGGAAAGATTGTTCCCTCAGAAGTGACGGTTAAGCTCTTACAAAAGGCAATGCATGAAAGTGAGAACGATAAATTTTTGATTGATGGGTTTCCTCGAAATGAAGAGAACCGTGCAGCATTTGAAAATGTTACAGGGATCCAACCGGATTTTATTCTATTCTTTGACTGTCCTGAGGAAGAGATGTCGAGGCGGCTCCTGAATAGGAACCAAGGCCGAGTTGATGACAATATAGAGACAATAACGAAGCGCTTCAAGGTCTTTTCTGAATCAAGTCTACCAGTTGTCAATTACTACGACTCAAAGGGGAAGGTTCGCAAGATCGATGCAGTAAAGACACGGGAAGATATCTTTGAGGATATTAAACTTCTTTTCGCAACTTACATTCAAGAAAAAGAGGAAGTAAAAGTTGGGTCTCTCAATTGA___ATTCAAGTATCATAGGCCTTATTGATAACAAGGGTGGTTTTAGTCATCACATATCGAAGCTACTGCAGTATGTCGTTATGCTGTTTAGTGTTATGTAGCAAATTGTACGAGTCCTTGTAGTCAGGACTGTAGGCCATATACAAGTCTTTTTTACTACCTAATTAAGGTTAGGATTATTAGAAATCATTTAGATGACAAGGCTTGTCGGGTGTGTTACATAGGCCTTTATATTGGTTCCTGTTGCAGTTCTTATTCTACAAGGGGCTAACTTCATAGTCTGTTACGGGATTGAACGAAGATATTTTAGTACTTTTGTTTCTTCTGTATGTAAAGGAGATGAAAATAATCTACTAATTTTTTATCTATGATAACACTCCTGGTAGGAGGGCATTTCTTTTCTGCATATTAAGTCTACCGCAACATA

Fln Alignment:

Contig3544___MTTEMAEAPTASVLEKKDNGVVSEEKKLHVVFVLGGPGSGKGTQCEKIVENFGFTHLSAGDLLRAELKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMHESENDKFLIDGFPRNEENRAAFENVTGIQPDFILFFDCPEEEMSRRLLNRNQGRVDDNIETITKRFKVFSESSLPVVNYYDSKGKVRKIDAVKTREDIFEDIKLLFATYIQEKEEVKVGSLN
D5A874_________________MATDMAEATTAAVLEKKDNGVMPEEKKLHVIFVLGGPGSGKGTQCEKIVENFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMQESENDKFLIDGFPRNEENRAAFENVTGIQPEFILFFNCPEEEMLKRLLNRNQGRVDDNVETITKRFRVFSESSLPVVNYYDSKGKVRKIDAVKSKEDVFENIKLLFAPFIQEKEEVEVGSLN

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
251	66		33		0.997452
488		14	85		0.993533
491	14		71	14	0.984337
495			83	16	0.994512
496	83			16	0.994512
546		75		25	0.996473
1360	11		88		0.923564
1361	11		88		0.923564
1442	12			87	0.992554
1443		12	87		0.992554
1445	87			12	0.992554
1446		87		12	0.992554
1463		16		83	0.994512
1464	16			83	0.994512
1497	80		20		0.995493
1538		25	75		0.996473
1540			50	25	0.995533
1541			75	25	0.996473
1542	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
87	100	TTA TTA TTA TTA TT	14

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain