SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3528

Length: 478 nt

UniGene Fasta

>biog3_v1.0_unigene3528
AATGTAAATTCCATAGCCTCTGTATTTCATGTTGCCATCCTTGTGTTCATCATCATTGCGGGGCTAACGCATGCAGATGCATCAAACTACTCAGACTTCATCCCTTACGGAGTGAGGGGTATTTTCACATCAGCTGCGACTATCTATTTTGCATACCTTGGCTTTGATACAGTTGCAACATTGGCAGAAGAGACTAAAAATCCTAAAAGGGACATTCCTATTGGACTTATTGGATCCATGTTGATCATCATAGTGATCTACTGTCTCATGGCTCTCACATTATGCCTCATGCAATACTACAAAGCCATTGATCCTGACGCTGCATACAGTTCTGTATTCACATCAGTGGGAATGGATTGGGCTAAATACATAGTAGCCTTAGGAGCCCTTGAGGGCATGACCACTGTCCTAATGGTGGGTATTATAGGCTCAGCCAGGTACCTGACCCACATTGCAAGGACACACATGTTCCCACCCT

Ace file of the UniGene biog3_v1.0_unigene3528

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8077	1/5
SustainPine v2.0	sp_v2.0_unigene9207	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transport protein AAT1 n=3 Tax=Arabidopsis RepID=Q84MA5_ARATH	-	-	68%
FL-Next	tr=Amino acid transport protein AAT1; Arabidopsis thaliana (Mouse-ear cress).	-	-	68%
Blast2go	cationic amino acid	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	L-arginine import	GO:0043091	Biological Process	80%
Blast2go	amino acid transmembrane transport	GO:0003333	Biological Process	80%
Blast2go	lysine transport	GO:0015819	Biological Process	80%
Blast2go	L-glutamate import	GO:0051938	Biological Process	80%
Blast2go	cationic amino acid transmembrane transporter activity	GO:0015326	Molecular Function	80%
Blast2go	L-lysine transmembrane transporter activity	GO:0015189	Molecular Function	80%
Blast2go	arginine transmembrane transporter activity	GO:0015181	Molecular Function	80%
Blast2go	L-glutamate transmembrane transporter activity	GO:0005313	Molecular Function	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Opsin	IPR001760	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Cationic amino acid transport permease	IPR004755	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Cationic amino acid transporter	IPR015606	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q96241

Fln msg: Distance to subject end: 209 aas, your sequence is shorter than subject: 159 - 533

Fln protein: NVNSIASVFHVAILVFIIIAGLTHADASNYSDFIPYGVRGIFTSAATIYFAYLGFDTVATLAEETKNPKRDIPIGLIGSMLIIIVIYCLMALTLCLMQYYKAIDPDAAYSSVFTSVGMDWAKYIVALGALEGMTTVLMVGIIGSARYLTHIARTHMFPP

Protein Length: 160

Fln nts: AATGTAAATTCCATAGCCTCTGTATTTCATGTTGCCATCCTTGTGTTCATCATCATTGCGGGGCTAACGCATGCAGATGCATCAAACTACTCAGACTTCATCCCTTACGGAGTGAGGGGTATTTTCACATCAGCTGCGACTATCTATTTTGCATACCTTGGCTTTGATACAGTTGCAACATTGGCAGAAGAGACTAAAAATCCTAAAAGGGACATTCCTATTGGACTTATTGGATCCATGTTGATCATCATAGTGATCTACTGTCTCATGGCTCTCACATTATGCCTCATGCAATACTACAAAGCCATTGATCCTGACGCTGCATACAGTTCTGTATTCACATCAGTGGGAATGGATTGGGCTAAATACATAGTAGCCTTAGGAGCCCTTGAGGGCATGACCACTGTCCTAATGGTGGGTATTATAGGCTCAGCCAGGTACCTGACCCACATTGCAAGGACACACATGTTCCCACCCT

Fln Alignment:

Contig3528___NSIASVFHVAILVFIIIAGLTHADASNYSDFIPYGVRGIFTSAATIYFAYLGFDTVATLAEETKNPKRDIPIGLIGSMLIIIVIYCLMALTLCLMQYYKAIDPDAAYSSVFTSVGMDWAKYIVALGALEGMTTVLMVGIIGSARYLTHIARTHMFPP
Q96241_________________NYIASIIHMVVILFVIIAGFTKADVKNYSDFTPYGVRGVFKSAAVLFFAYIGFDAVSTMAEETKNPGRDIPIGLVGSMVVTTVCYCLMAVTLCLMQPYQQIDPDAPFSVAFSAVGWDWAKYIVAFGALKGMTTVLLVGAIGQARYMTHIARAHMMPP

SNPs (tot: 3)

Position	C %	G %	T %	Probability
202	66	33		0.997452
203	66		33	0.997452
268	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain