SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3525

Length: 355 nt

UniGene Fasta

>biog3_v1.0_unigene3525
AATGTCTTGAATATACCTTTCACATTTCAGGTGGTTGAAATCCCACAGAATGAAGATTTGAATCGTTCAATGTTAAACCTGAAAGAAGGAGAAACCATAGCAGTGAATTATTCTCTTGGAATGCAAGGATTACTCTCGAAGGACTCAATAGCTTCTATTTTGCGCCTTATTAATCGACTCCGCCCTAAGATAGTTGTGGTAGTCGACCATGAGAATGAGCAAGCTGGAAGCTCATTTGCACAGAAGTTCATGGAGGCTCTTCAGTTTTATGCCCTTCTATTTGAATCCCTTGAGGCTGTACACATGAATATGGAGACAATTGAGATGATAGAAAAGTTTGTCATGGCACCTAGAA

Ace file of the UniGene biog3_v1.0_unigene3525

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1634	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	pfam03514, GRAS, GRAS family transcription factor	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	gras family transcription factor	-	-	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABF0

Fln msg: Distance to subject end: 96 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 95 - 193

Fln protein: MLNLKEGETIAVNYSLGMQGLLSKDSIASILRLINRLRPKIVVVVDHENEQAGSSFAQKFMEALQFYALLFESLEAVHMNMETIEMIEKFVMAPR

Protein Length: 96

Fln nts: AATGTCTTGAATATACCTTTCACATTTCAGGTGGTTGAAATCCCACAGAATGAAGATTTGAATCGTTCA_-_ATGTTAAACCTGAAAGAAGGAGAAACCATAGCAGTGAATTATTCTCTTGGAATGCAAGGATTACTCTCGAAGGACTCAATAGCTTCTATTTTGCGCCTTATTAATCGACTCCGCCCTAAGATAGTTGTGGTAGTCGACCATGAGAATGAGCAAGCTGGAAGCTCATTTGCACAGAAGTTCATGGAGGCTCTTCAGTTTTATGCCCTTCTATTTGAATCCCTTGAGGCTGTACACATGAATATGGAGACAATTGAGATGATAGAAAAGTTTGTCATGGCACCTAGAA

Fln Alignment:

Contig3525___MLNLKEGETIAVNYSLGMQGLLSKDSIA--SILRLINRLRPKIVVVVDHENEQAGSSFAQKFMEALQFYALLFESLEA
D5ABF0_________________MLHVKEKETVAVNCMLQLHKTLYDNGAALRGILGLIQSTKPAVVVVVEQEANHNDQIFEGRFLQALQYYSAIFDSIDA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
164	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain