SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3501

Length: 448 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3501
CATTCAACCTCCTCACCTGTCTAAATTCAGCACCCATTAATTGAGCCCTGCTGCATGCCTAAGTCCTACATATCCGAGGAGACGATTTAATGAAGTTTTATAGTTGAAATCTCATCGAGAATATCTGTATTACAGGAGAAGCATCAACAGGAGGAGGAAGAAAGGTTAGAATGGTGGGAGGCAAGGCGAATGTTAGTGTTTTAATGTCACAAGATGATTCTTTTCAGCAGAAAGTGGTGTTGGAGAAGAGGCTGAAGATAGGGGAGGTAATTTTGAGGTTTGTTATGTTTGCTTTGGCACTTGTTGCGGCAGTCCGCGTGGGGACTGATACACAGACTCGTACCATATTCACCATTGAAAAGAAGGCCAAGTTCAGTGACATGAAGGCTCTTGTGTTTCTTGTTGTTATAAATGGAATTGTAGCTTCCTATTCTCTTCTGAAGACATT

Ace file of the UniGene biog3_v1.0_unigene3501 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9743	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	UPF0497 membrane protein 5 n=1 Tax=Picea sitchensis RepID=U4975_PICSI	-	-	75%
FL-Next	sp=CASP-like protein 9; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	integral membrane family protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	0.0	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant subgroup	IPR006459	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQF9

Fln msg: Distance to subject end: 106 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 92 - 238

Fln protein: MVGGKANVSVLMSQDDSFQQKVVLEKRLKIGEVILRFVMFALALVAAVRVGTDTQTRTIFTIEKKAKFSDMKALVFLVVINGIVASYSLLKT

Protein Length: 93

Fln nts: CATTCAACCTCCTCACCTGTCTAAATTCAGCACCCATTAATTGAGCCCTGCTGCATGCCTAAGTCCTACATATCCGAGGAGACGATTTAATGAAGTTTTATAGTTGAAATCTCATCGAGAATATCTGTATTACAGGAGAAGCATCAACAGGAGGAGGAAGAAAGGTTAGA_-_ATGGTGGGAGGCAAGGCGAATGTTAGTGTTTTAATGTCACAAGATGATTCTTTTCAGCAGAAAGTGGTGTTGGAGAAGAGGCTGAAGATAGGGGAGGTAATTTTGAGGTTTGTTATGTTTGCTTTGGCACTTGTTGCGGCAGTCCGCGTGGGGACTGATACACAGACTCGTACCATATTCACCATTGAAAAGAAGGCCAAGTTCAGTGACATGAAGGCTCTTGTGTTTCTTGTTGTTATAAATGGAATTGTAGCTTCCTATTCTCTTCTGAAGACATT

Fln Alignment:

Contig3501___ANVSVLMSQDDSFQQKVVLEKRLKIGEVIXXXXXXXXXXXXXXXVGTDTQTRTIFTIEKKAKFSDMKALVFLVVINGIVASYSLLK
B8LQF9_________________ANVSVLMSEDASFHQKVAVEKRLKIGEVILRFAMIALALVAAVRVGTDTQTRTIFTIEKKAKYSDMKALVFLVVMNGIVASYSLLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain