SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3499

Length: 273 nt

UniGene Fasta

>biog3_v1.0_unigene3499
CTAACACAGATGGCATTGATCCAGATTCAAGCTCTGATGTGTGCATAGAGGACTGTTACATTAGCTGTGGCGATGATGTCATTTCCATCAAAAGTGGTTGGGATGAGTATGGTATTACTTATGGGCGCCCTAGCTCCAATATTATTATCCGTCGTGTGATTGGACAAACACATACAAGTTCTGGTCTTGCTTTGGGCAGTGAAATGTCTGGTGGCATCAAAGGTGTCCATGCTCAAGACAATTCAGATTTTCAACTCAAGAAGAGGCCACATT

Ace file of the UniGene biog3_v1.0_unigene3499

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1220	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9TA63_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	probable polygalacturonase-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galacturan 1,4-alpha-galacturonidase.	EC:3.2.1.67	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Pentose and glucuronate interconversions	00040		79%
Blast2go	Starch and sucrose metabolism	00500		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	79%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	79%
Blast2go	Starch and sucrose metabolism	00500	79%
Blast2go	Metabolic pathways	01100	79%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	79%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	79%
Blast2go	galacturan 1,4-alpha-galacturonidase activity	GO:0047911	Molecular Function	79%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	79%
Blast2go	vacuole	GO:0005773	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg: Distance to subject end: 152 aas, your sequence is shorter than subject: 90 - 472

Fln protein: NTDGIDPDSSSDVCIEDCYISCGDDVISIKSGWDEYGITYGRPSSNIIIRRVIGQTHTSSGLALGSEMSGGIKGVHAQDNSDFQLKKRPH

Protein Length: 91

Fln nts: CTAACACAGATGGCATTGATCCAGATTCAAGCTCTGATGTGTGCATAGAGGACTGTTACATTAGCTGTGGCGATGATGTCATTTCCATCAAAAGTGGTTGGGATGAGTATGGTATTACTTATGGGCGCCCTAGCTCCAATATTATTATCCGTCGTGTGATTGGACAAACACATACAAGTTCTGGTCTTGCTTTGGGCAGTGAAATGTCTGGTGGCATCAAAGGTGTCCATGCTCAAGACAATTCAGATTTTCAACTCAAGAAGAGGCCACATT

Fln Alignment:

Contig3499___NTDGIDPDSSSDVCIEDCYISCGDDVISIKSGWDEYGITYGRPSSNIIIRRVIGQTHTSSGLALGSEMSGGIKGVHAQD
B8LQW0_________________NTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAED

SNPs (tot: 3)

Position	A %	G %	T %	Probability
114	20		80	0.995493
117		20	80	0.995493
118	80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain