SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3493

Length: 1925 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3493 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16970	43/56
SustainPine v2.0	sp_v2.0_unigene22364	13/56

Source	Descriptions	Term	Type	Identity
AutoFact	Heterogeneous nuclear ribonucleoprotein 27C, putative n=1 Tax=Ricinus communis RepID=B9SQV8_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	heterogeneous nuclear ribonucleoprotein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVN2

Fln msg: Separated hits, possible frame ERROR between 639 and 809, your sequence is shorter than subject: 460 - 476

Fln protein: YFSKYGEVVQTVIMKDRLTGRARGFGFVVFSDPSMVDIALQEKHTIDGRAVEAKKAVPRSEQHNARTNNYNNNDNHGQSYGGGGGGSVRTKKIFVGGLPANLTEEDFKNYFQQFGNITDVVVMYDHNTQRPRGFGFISFDSEDAVENVLQKSFHQLNEKLVEVKRALPKDASPGAASRGAGGYQGYNNSTSNIGGYEGRMDNNRYGQPPPAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSTPVPNTAFGNGPVGAPRNPWGNAGAAGYGNQGNTAGYGTNAGYAAAAPWPASGATVSGAAGQSPSTGNGYANPNYGYGYANNDGTYNSNAAGGYGGPGRGGTAPNYNMGNTNGEQAATGGPYAVSYGDPHGNSGYSETVWKSGGPDASSAGFVAASSGGYGVPNVDGTVNGPTGYGGYGAAGRQNQRQ*

Protein Length: 461

Fln nts: TACTTCAGCAAGTATGGAGAGGTTGTTCAGACTGTCATCATGAAAGATCGGCTCACGGGTCGTGCCAGAGGGTTCGGTTTTGTGGTCTTCTCAGACCCCTCGATGGTCGACATAGCTCTTCAGGAAAAGCACACCATCGACGGCAGAGCGGTGGAAGCAAAGAAAGCAGTTCCCAGAAGTGAGCAGCATAATGCCAGAACCAACAACTACAATAACAATGACAATCACGGTCAAAGTTACGGAGGAGGAGGAGGAGGATCTGTTAGGACCAAGAAAATATTTGTAGGGGGGTTGCCAGCCAATCTAACGGAAGAAGATTTCAAGAATTATTTTCAGCAGTTTGGCAACATTACAGATGTTGTTGTAATGTATGACCATAATACTCAGAGACCAAGGGGTTTTGGATTCATATCTTTTGATTCAGAAGATGCAGTTGAGAATGTTTTGCAGAAGTCTTTTCATCAGTTGAATGAAAAACTTGTAGAAGTTAAGCGTGCATTACCCAAGGATGCTTCTCCTGGAGCTGCAAGCAGAGGTGCTGGAGGCTATCAAGGTTATAACAACTCAACCTCAAATATTGGTGGCTATGAAGGAAGAATGGATAATAACAGGTATGGGCAGCCTCCTCCTGCAGGGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAGTACTCCTGTACCAAACACAGCTTTTGGTAATGGCCCAGTTGGAGCTCCTAGGAACCCATGGGGTAATGCAGGGGCTGCTGGTTATGGAAACCAAGGTAATACTGCTGGCTACGGGACAAATGCAGGCTATGCAGCTGCAGCTCCCTGGCCTGCTTCAGGTGCTACTGTTTCTGGTGCAGCTGGGCAATCTCCCAGCACTGGTAATGGCTATGCAAACCCAAATTATGGATATGGTTATGCAAACAATGATGGGACTTACAATTCTAATGCAGCTGGAGGCTATGGTGGTCCTGGCCGTGGAGGTACGGCTCCAAATTACAACATGGGCAACACCAATGGTGAACAAGCGGCAACAGGAGGACCTTATGCAGTTAGCTATGGAGATCCCCATGGTAACTCTGGATATTCAGAGACGGTCTGGAAATCAGGTGGGCCAGATGCTTCTTCAGCAGGTTTTGTTGCAGCATCAAGTGGAGGATATGGAGTTCCTAATGTGGATGGGACAGTGAATGGGCCAACAGGATATGGAGGATATGGTGCTGCTGGCCGGCAGAATCAGAGGCAGTGATGCTTTTAAGTATTGGGTCATTCTTTGACCTTACCAGTCTTTTCCAGGCCCGGGAGTTCTAAATGCAGCTTGCTACTCTCTGGCATTCTTCTGGGCAGAGATAAAAACATATGTTGGGACTGGTCGGGTTGCTTTAAATCCCCCAACTGTTTAGCCTAGGTCTTTTGCAAATATCTAAGACTAAAACATAATTAGATGGGAGAGTTAGGAATCTCTCTCGCTGCTAGTTTTTGTTTGAAGCTATGGTTTTGTCTTATGAGTATTGCAGGCAGATAGCTTTGTATTAGCTTCCCGTTTTACATACTAGATTAGTTATTAGGTGCTTTTATGCTTCTGTTTAGGATGACTCATTTTATGTTTAAGCTACTGAGAGGCTTTAGTAGTTTACTAGTTTATGAACTAGAGGATTTTATAATTACTTTTGGAGTGGAGTATATTGTTGAAAATCATAGAATGGTTTATTTTAAGCAGTTCAGCAACCTGGGATGTGTGAAAAATTAGGATCTTTCCTATACTTTGATAATTTCAGTTGTCTCATATATACATT

Fln Alignment:

Contig3493___YFSKYGEVVQTVIMKDRLTGRARGFGFVVFSDPSMVDIALQEKHTIDGRAVEAKKAVPRSEQHXXXXXXXXXXXNHGQSYXXXXXGSVRTKKIFVGGLPANLTEEDFKNYFQQFGNITDVVVMYDHNTQRPRGFGFISFDSEDAVENVLQKSFHQLNEKLVEVKRALPKDXXXXXXXXXXXGYQGYNNSTSNIGGYEGRMDNNRYGQPPPAGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSTPVPNTAFGNGPVGAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSGAAGQSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNMGNTNGEQAATGGPYAVSYGDPHGNSGYSETVWKSGGPDXXXXXXXXXXXXXXGVPNVD
A9NVN2_________________YFSKYGEVVQTVIMKDRLTGRARGFGFVVFSDPSIVDIALQEKHTIDGRAVEAKKAVPRSEQQNTRTNSYNNNDSQGYG-----GGSVRTKKIFVGGLPANLTEEDFKNYFQQFGNITDVVVMYDHNTQRPRGFGFISFDSEDAVESVLQKSFHQLNEKLVEVKRALPKDASPGAAGRGAGGYQGYNNSTSNTGGYEGRMDNNRYGQPPPAGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSTPVPNTAFGNGPVGAPRNPWGNAGAAGYGTQGNSAGYGTNAGYAAAPWPASGAT-ASGAAGQSPSTGNGYANPNYGYGYSNNDGTYNTSAAGGYGGPGRGGAAPNY-MGNTNGEQAGTGGAYAVSYGDPHGNSGYSETVWKSGGPDTASAAFVAASSGGYGVPNAD

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
225	40	40		20	1.0
226	80		20		0.995493
227			40	60	1.0
228		60		40	1.0
281	33	66			0.997452
282	33	66			0.997452
285		66		33	0.997452
368	33			66	0.997452
373	25	75			0.996473
374	25			75	0.996473
376	75		25		0.996473
377			75	25	0.996473
490		25		75	0.996473
535	20	80			0.995493
536		80		20	0.995493
537		80	20		0.995493
538	80			20	0.995493
583	16	83			0.994512
584		83		16	0.994512
585	83		16		0.994512
691	14	85			0.999981
692	14	85			0.999981
868	12	87			0.992554
872		87		12	0.992554
893	15	84			0.999986
896	83			16	0.999991
907			90	10	0.90298
916		10		90	0.90298
1054	20			80	0.995493
1056	80		20		0.995493
1057		80		20	0.995493
1121	33	66			1.0
1269	14		85		0.993533
1270	14		85		0.993533
1272		85	14		0.993533
1273		85		14	0.993533
1307	40			60	1.0
1346	50		50		1.0
1442	57			42	1.0
1498		90	10		0.90298
1512	11			88	0.923564
1515	88			11	0.923564
1516	88			11	0.923564
1587	25	75			1.0
1590	75			25	1.0
1591	75			25	1.0
1593	16			83	0.994512
1594		16	83		0.994512
1595	16	83			0.994512
1597			83	16	0.994512
1605	20			80	0.995493
1607	16	66	16		0.988813
1608	16			83	0.994512
1611	83			16	0.994512
1671		16	83		0.994512
1674		83		16	0.994512
1810		25	75		0.996473
1811	75	25			0.996473
1812	75	25			0.996473
1821	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1668	1685	TCC TCC TCC TCC TCC TCC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain