SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3492

Length: 1757 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3492

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15347	127/132
SustainPine v2.0	sp_v2.0_unigene15823	3/132
SustainPine v2.0	sp_v2.0_unigene79105	2/132

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=2 Tax=Pinaceae RepID=C9EIK5_9CONI	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nad-malate dehydrogenase	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, type 1	IPR010097	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUM0

Fln msg:

Fln protein: MASATLFMNSVSASGVLAPICETRPSVAGLQGQASAVSFPMKKVFKTFSGLKAGVACESESSFFSHETNAVLWSSARRPRSAENGQTVQKAGQIRASTFKVAILGAAGGIGQPVSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEQLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK*

Protein Length: 414

Fln nts: GAGCACA_-_ATGGCATCTGCAACACTGTTCATGAATTCAGTTTCTGCCTCTGGGGTTCTAGCACCCATTTGTGAAACTCGTCCATCTGTTGCTGGACTCCAGGGCCAGGCTTCTGCAGTTAGCTTTCCTATGAAGAAGGTTTTCAAGACTTTCAGTGGCCTGAAAGCTGGTGTAGCCTGTGAATCTGAGTCATCCTTCTTTAGTCATGAGACAAATGCGGTTCTTTGGTCGTCTGCTAGGAGGCCAAGGTCAGCAGAAAACGGACAGACTGTTCAAAAGGCTGGTCAGATTCGGGCATCAACATTTAAGGTTGCTATTCTTGGAGCTGCTGGAGGGATTGGGCAGCCGGTCTCACTGTTGATTAAAATGTCTCCTCTGATTTCTGGTTTGCATCTTTATGATATTGCAAATGTGAAAGGTGTTGCAGCAGATCTTAGCCACTGCAACACTCCAGCACAGGTTCTAGATTTTACTGGGCCAGCTGAACTGGCAAATTGTTTGAAGGGTGTAGATGTGGTGGTCATCCCTGCAGGAGTTCCAAGAAAGCCAGGCATGACTCGAGATGACCTTTTCAACATCAATGCTGGTATTGTGAGGACCTTGGTAGAAGCTGTTGCAGATAACAGTCCTAATGCCTTCATTCAAATCATCAGTAACCCTGTAAATTCAACGGTACCTATTGCTGCTGAGGTGCTGAAGCAGAAAGGCGTATATGATCCTAAAAAGCTGTTTGGTGTAACTACCCTGGACGTTGTTAGAGCAAACACTTTTGTTGCTCAGAAAAAGAATCTAAGACTTATTGATGTTGACGTGCCAGTTGTTGGAGGTCATGCTGGGATCACCATTCTTCCATTACTGTCCAAAACCAAGCCTTCTGTAACATTCACGCAGGAGGAGATTGAACAGCTTACAGTCAGAATTCAGAATGCTGGAACTGAAGTTGTGGAAGCAAAAGCGGGCGCTGGATCTGCAACTCTCTCCATGGCTTATGCTGCTGCTAGATTTGTTGAATCTTCTCTCCGTGCACTTGATGGTGATCCTGATGTGTATGAGTGTTCTTATATTCAATCTGAACTGACAGAATTACCTTTCTTTGCTTCTAGGATTAAACTTGGGAAGCAAGGTGTTGAAGCGGTGATTGCCTCAGACCTTGAGGGGCTGACTGAGTATGAACAGAAATCTCTAGAAGCTCTTAAGCCAGAGTTGAAGGCAAGCATTGAAAAGGGCATTGCTTTTGCAAACAAGTAA___GCACCAGTTGGTAGTGCCGTTTGAAGGCATTCCATTTAACTTGAATTGTAGGACAAATAAGATGAGCAACATGCACTACGGCTTTAGGGCGCTGTCGTTTTTGCAGTTTAGGCATATATTTTTGCATTTTGGTACTAAAGACAATTCCAAGCTCTTTTGAGGAAAGACGGAGTACTGACGGTTATCTACTTTTCCATGCCCTTAGCTTTTCCAGAGGAATTCTCAATAAGGTCTTTATTGATCTAATGTTTATTTCACCAGAAACTGCTAATACAAGTTCCCAATACCACATGTTTTTAGGTTGTTGCAAATAGGCATAGATTTTGCATATTGATACAAAGACAATTTCCAGTCCTTTTGAGGAAAGACAGAAGGTTGACTTTCTTATGCGGGCTTGGTGATTCACTATTATTTACTTTCTCATGTCCTGAGCTTTTACGGAGAAATTCTCAGCAAGGTCTTTATTGATTTAATGTTTATTTTGCTAGAAACTGCGAATACAAGTCACATT

Fln Alignment:

Contig3492___MASATLFMNSVSASGVLAPICETRPSVAGLQGQASAVSFPMKKVFKTFSGLKAGVACESESSFFSHETNAVLWSSARRPRSAENGQTVQKAGQIRASTFKVAILGAAGGIGQPVSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEQLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK
A9NUM0_________________MASATSFMSSVSVSGFLAPICETRPSGAGLQ--ASAVSFPTKKVFNTFSGLKAGVACESEASFFSHETNAVLWSSVSRPRSAENRQIVPSAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQILDFTGPAELANSLKDVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQDEIEQLTIRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKKGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1554	12		87		0.992554
1555	12			87	0.992554
1624			80	20	0.995493
1635	20			80	0.995493
1636		20		80	0.995493
1639			85	14	0.993533
1704		50		50	1.0
1720		33		66	0.997452
1721		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain