SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3445

Length: 195 nt

UniGene Fasta

>biog3_v1.0_unigene3445
GGCGTAGAAATCCTTCTTAGTCAAATTTTGGACTCAGACCGAGTCCCGGAGGAGGCATGACAAAGGATGAAGATTTCAAGCTTATTAAAACCCAGACTTGGGTTCTGAAGGTGTACATACACTGTGAGGGATGCAAGAAAAAGGTCAAGAAAGTTCTCCAGGGCATTGATGGTGTATACACTACCACCATTGATG

Ace file of the UniGene biog3_v1.0_unigene3445

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11846	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Drf_FH1 multi-domain protein	-	-	2.0e-16	39%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	76%
Blast2go	protein	-	-	5.85891e-26	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	5.85891e-26	82%
Blast2go	metal ion binding	GO:0046872	Molecular Function	5.85891e-26	82%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Peptidase M12B, ADAM/reprolysin	IPR001590	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Blood coagulation inhibitor, Disintegrin	IPR001762	-	-
Sma3	Polymorphic outer membrane protein repeat	IPR003368	-	-
Sma3	Patched	IPR003392	-	-
Sma3		IPR003612	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Peptidase, metallopeptidase	IPR006026	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Peptidase M10B, serralysin, C-terminal	IPR013858	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6HFJ4

Fln msg: Distance to subject end: 344 aas, your sequence is shorter than subject: 46 - 390

Fln protein: MTKDEDFKLIKTQTWVLKVYIHCEGCKKKVKKVLQGIDGVYTTTID

Protein Length: 47

Fln nts: GGCGTAGAAATCCTTCTTAGTCAAATTTTGGACTCAGACCGAGTCCCGGAGGAGGC_-_ATGACAAAGGATGAAGATTTCAAGCTTATTAAAACCCAGACTTGGGTTCTGAAGGTGTACATACACTGTGAGGGATGCAAGAAAAAGGTCAAGAAAGTTCTCCAGGGCATTGATGGTGTATACACTACCACCATTGATG

Fln Alignment:

Contig3445___MTKDEDFKLIKTQTWVLKVYIHCEGCKKKVKKVLQGIDGVYTTTID
F6HFJ4_________________MTKDEDFKLLKIQTCVLKVNIHCDGCKQKVKKLLQRIEGVYTVNID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain