SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3422

Length: 358 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3422
AATGTGAGATGGGTTGCATTCCTTTTAATACATTTGATACACAAGTCCTGTGCTCAGACCACTGACTTTGATTTCTCAATCCTTTCTCTCACAAATCTTACACTTTTGGGAGATGCTCATCTGAAGAATGGTACAGTGAGCCTTAGCAGAGAGCTGGGAGTACCAACTTCAAGTGCAGGTAGGGCATTGTACAACAGACCAGTTAGATTTCTGGACCCTTATACAAAAGTTTCTGCTTCTTTCAAAACACGTTTCTCGTTTTCTGTAACCAATGTGGGTCCTGTTCCTGTTTCAATTGGGGATGGATTAGCATTTGTTATTGCTCCAGATGATCACTCTCTGGGTAGCACTGGAGGCT

Ace file of the UniGene biog3_v1.0_unigene3422 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11977	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	L-type lectin-domain containing receptor kinase VIII.2 n=2 Tax=Arabidopsis RepID=LRK82_ARATH	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	concanavalin a-like lectin kinase-like protein	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	69%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	69%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	69%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	69%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NK70

Fln msg: Distance to subject end: 230 aas, your sequence is shorter than subject: 119 - 366

Fln protein: NVRWVAFLLIHLIHKSCAQTTDFDFSILSLTNLTLLGDAHLKNGTVSLSRELGVPTSSAGRALYNRPVRFLDPYTKVSASFKTRFSFSVTNVGPVPVSIGDGLAFVIAPDDHSLGSTGG

Protein Length: 120

Fln nts: AATGTGAGATGGGTTGCATTCCTTTTAATACATTTGATACACAAGTCCTGTGCTCAGACCACTGACTTTGATTTCTCAATCCTTTCTCTCACAAATCTTACACTTTTGGGAGATGCTCATCTGAAGAATGGTACAGTGAGCCTTAGCAGAGAGCTGGGAGTACCAACTTCAAGTGCAGGTAGGGCATTGTACAACAGACCAGTTAGATTTCTGGACCCTTATACAAAAGTTTCTGCTTCTTTCAAAACACGTTTCTCGTTTTCTGTAACCAATGTGGGTCCTGTTCCTGTTTCAATTGGGGATGGATTAGCATTTGTTATTGCTCCAGATGATCACTCTCTGGGTAGCACTGGAGGCT

Fln Alignment:

Contig3422___DFSILSLTNLTLLGDAHLKNGTVSLSRELGVPTSSAGRALYNRPVRFLDPY-TKVSASFKTRFSFSVTNVGPVPVSIGDGLAFVIAPDDHSL
A9NK70_________________NFNVKPSSEITLLGDAEVIADGESSVRICGSSPRTAGRLMYGRPVRLLQPLGPRSSVSFSSYFSFSMSS------GNGDGLAFVILPRGNPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain