SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3390

Length: 550 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3390
AATGTGGAGAGGTTACTTCTTATTTTCCAGGCATTCATGGCCAGGGTGCAATCCGAAGATGGCAACTACTAACTGGTGCTACCTGGTCAAATTTGCCTTCACCTGCGGGTATTGTTGAAGAAAAGGTTATCCCCACTTTAGAACCTTTGCCACTGCATGTTCATGGAACCCATAAAGCGATTCTGGTTGCAGGAGAACAGGAGGCAGTTATTCTTTCCCCAGATGGTAGTCAGCTCACGTCAATCTTCTTGCCATCTCCACCTACCCACCCCATAATATATGGTGATTTTTCAAATGATGGCTTGAATGACCTGATTCTAGTAACTTCTGATGGAATTTATGGATTTGTGCAAACCCGGCAACCTGGTGCCCTCTTCTTCAGTTCCCTGGTTGGTTGTTTGATAGTTGTCATGGTTGTTATACTCATCTCTCAACATTTTAACTCGACAAACTCAAAACCAAGGCCCTTTGAAAGAAAGAGCACTGACCCAAGGTAATATGTGTACTATGAGCATATTTTGGATGAAGAAGAATCTTTTTGTTCTACATT

Ace file of the UniGene biog3_v1.0_unigene3390 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2568	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; subsp. trichocarpa).	-	-	62%
Blast2go	protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aldehyde dehydrogenase (NAD(P)(+)).	EC:1.2.1.5	-	0.0	77%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010		77%
Blast2go	Histidine metabolism	00340		77%
Blast2go	Tyrosine metabolism	00350		77%
Blast2go	Phenylalanine metabolism	00360		77%
Blast2go	beta-Alanine metabolism	00410		77%
Blast2go	Metabolism of xenobiotics by cytochrome P450	00980		77%
Blast2go	Drug metabolism - cytochrome P450	00982		77%
Blast2go	Metabolic pathways	01100		77%
Blast2go	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	77%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	77%
Blast2go	Pentose and glucuronate interconversions	00040	77%
Blast2go	Ascorbate and aldarate metabolism	00053	77%
Blast2go	Fatty acid metabolism	00071	77%
Blast2go	Valine, leucine and isoleucine degradation	00280	77%
Blast2go	Lysine degradation	00310	77%
Blast2go	Arginine and proline metabolism	00330	77%
Blast2go	Histidine metabolism	00340	77%
Blast2go	Tryptophan metabolism	00380	77%
Blast2go	beta-Alanine metabolism	00410	77%
Blast2go	Glycerolipid metabolism	00561	77%
Blast2go	Pyruvate metabolism	00620	77%
Blast2go	Chloroalkane and chloroalkene degradation	00625	77%
Blast2go	Propanoate metabolism	00640	77%
Blast2go	Limonene and pinene degradation	00903	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	cell-matrix adhesion	GO:0007160	Biological Process	77%
Blast2go	cellular aldehyde metabolic process	GO:0006081	Biological Process	77%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	aldehyde dehydrogenase [NAD(P)+] activity	GO:0004030	Molecular Function	77%
Blast2go	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	77%
Blast2go	integrin complex	GO:0008305	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase NAD(P)-dependent	IPR012394	-	-
Sma3	FG-GAP	IPR013517	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9PIE0

Fln msg: your sequence is shorter than subject: 165 - 242

Fln protein: CGEVTSYFPGIHGQGAIRRWQLLTGATWSNLPSPAGIVEEKVIPTLEPLPLHVHGTHKAILVAGEQEAVILSPDGSQLTSIFLPSPPTHPIIYGDFSNDGLNDLILVTSDGIYGFVQTRQPGALFFSSLVGCLIVVMVVILISQHFNSTNSKPRPFERKSTDPR*

Protein Length: 166

Fln nts: AATGTGGAGAGGTTACTTCTTATTTTCCAGGCATTCATGGCCAGGGTGCAATCCGAAGATGGCAACTACTAACTGGTGCTACCTGGTCAAATTTGCCTTCACCTGCGGGTATTGTTGAAGAAAAGGTTATCCCCACTTTAGAACCTTTGCCACTGCATGTTCATGGAACCCATAAAGCGATTCTGGTTGCAGGAGAACAGGAGGCAGTTATTCTTTCCCCAGATGGTAGTCAGCTCACGTCAATCTTCTTGCCATCTCCACCTACCCACCCCATAATATATGGTGATTTTTCAAATGATGGCTTGAATGACCTGATTCTAGTAACTTCTGATGGAATTTATGGATTTGTGCAAACCCGGCAACCTGGTGCCCTCTTCTTCAGTTCCCTGGTTGGTTGTTTGATAGTTGTCATGGTTGTTATACTCATCTCTCAACATTTTAACTCGACAAACTCAAAACCAAGGCCCTTTGAAAGAAAGAGCACTGACCCAAGGTAA___TATGTGTACTATGAGCATATTTTGGATGAAGAAGAATCTTTTTGTTCTACATT

Fln Alignment:

Contig3390___GEVTSYFPGIHGQGAIRRWQLLTGATWSNLPSPAGIVEE-KVIPTLEPLPLHVHGTHKAILVAGEQEAVILSPDGSQLTSIFLPSPPTHPIIYGDFSNDGLNDLILVTSDGIYGFVQTRQPGALFFSSLVGCLIVVMVVILISQHFNSTNSKPR
A9PIE0_________________GEVTSYSPGLHGHDAVWQWQILTGATWSNLPSPSGMMEGGMVVPTLKAFSLRAHDNQQMILAAGDQEAAVISPGGSVQTSFDLPAPPTHALICEDFTNDGLTDLIVVTSNGVYGFVQTRSPGALFFSTLVGCLLIVMGVIFVTQHINSIKGKPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain