SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3358

Length: 2011 nt

UniGene Fasta

>biog3_v1.0_unigene3358
CTAATCTTTCAAGTTGACAGTGCAGTCCAAATCGCTGGCTCCTTATCCTGCTGCTATAAAAACATTTCTTTCCCACTGGCAAGTCCACCAACGATGACGGACTTCGGATGCCAATATTGACTCCTAATTTGATGCTTGTATCTGGTCATTGTCCAATTCCATTTTTTAAGATTGTAGGTCTGCAATTTTCAACTTTGGCGTACCACGTGCATTTGTTGAGCTGGACTTGACCATTAGATGTTTGCTCTTGAGAAATCTCACGAGTTTGTGGCCCAGAACAGTTTTTTCAATTCCTTTTATAATCCACTCTCCTCTGAAGTTAGTGTCTACAGAGTACCCAAGTACTCTTTATAAACTCTGAATGATTGCTAGCTCAAATAGGCAACGAAGAATTGCTTGTAAACTATTCCTGAGAAGTGGGTTTGTTACACAATTCTCAAATATCATTGATCTTCAGGATTTTGGATCACATCTGAGAACCCAGGTATGGGAGAAGAGTTGCAGACATGGATATTAATGGTCACTGCTAGAGCTCCTACAAATATAGCAGTAATCAAGTACTGGGGGAAAAGAGATGAAAAGCTGATCCTTCCGATCAATGACAGCATCAGCTTTACTTTGGATCCAGACCATCTGTCAGCCACAACCACTGTAGCAGTTAGCCCATCATTCACATCTGATAGAATGTGGCTCAACGGCAAGGAGGTCTCCCTTGGAGGGGAGAGATATCAGAATTGTCTGAGGGAAATCAGAAGCAGGGGAAATGATGTAGTGGACGAGAAGAAGGGAATTGTTATCAGGAAAGAGGATTGGCAGAGGCTTCACTTGCATATTGCTTCGTATAATAATTTCCCAACTGCAGCTGGCTTGGCTTCTTCTGCTGCTGGATTCGCTTGTCTAGTTTATGGTCTGGCAAAATTAATGGACGTCAAGGAAAAATATCAGGGGGAACTTTCAGCCATTGCCCGCCGAGGTTCAGGGAGTGCATGCCGTAGCCTTTATGGTGGAGTTGTAAAATGGATGATGGGAAAGGAAACCGATGGAAGTGACAGCATTGCTGTTCAGCTTGCAACTGAGAAACATTGGGAGGATCTTGTCATTTTGATTGCTGTGGTAAGCTCACGTCAGAAGGAAACAAGCAGCACAACTGGCATGAGTCAAAGTGTTGAAACTAGTGAACTTCTTCGCCACAGATCACAGGAAGTAGTTCCGAAGCGAATTTTGCAAATGGAAGAAGCAATTGCAAATCATGATTTTGGATCCTTTGCGAAGACTACTTGTGCAGACAGTAACCAGTTCCATGCAGTTTGCCTTGACACATCTCCTCCAATATTCTACATGAATGACACATCACACAGGATTATTAACTGTATTGAAAGATGGAATCGGTCTGAAGGAACTCCACAGGTTGCATACACTTTTGATGCTGGTCCAAATGCAGTAATGTACGCACCTAATAGGAAAGTTGCAGGCCACCTTCTTCAGCGACTGCTTTTCTATTTTCCTCCGGACTCCAGCAAAACATTGTCAAGTTATGTGATAGGCGACACCTCAATACTAGGAGAAATCGGCGTGGACTCAATGAAGGATGTTGAATCCTTGACTGCTCCTCCAGAGCTCAAGAGTGAAAGCAGCAGTTCCACATTTCCAGGCAGTATCGATTACTTCATCTGTACTCGACCTGGAAAAGGTCCTATCCTGTTTAGAAATGAAGATCAAGCTCTTCTTAACCCAAAAACAGGTTTTCCTCTATAGAGCAGTCAAACCTGAGTTTCTTCTTTTGCTTTAGGGCTACTGTGGACTGGCTAGAAAAGTCATGTAAGTTTACAGTAAACAGGATTCTGGCAATTGTTATGTTAGACCTGAATTTGATTGTCATATTATTTTTGGGTTTTGTACCTCCTTGAAGTATCGAGGTACCTTTTCACTTTCAGAACTGTTATTGTGTTAGCAAATAATTGGTTATGATATCGGTTTGTGACATTTCCCCAAGTCCTGGATTATGGACATT

Ace file of the UniGene biog3_v1.0_unigene3358

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3543	59/60

Source	Descriptions	Term	Type	Identity
AutoFact	Mevalonate disphosphate decarboxylase n=1 Tax=Ginkgo biloba RepID=Q5UCT8_GINBI	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	mevalonate disphosphate decarboxylase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Diphosphomevalonate decarboxylase.	EC:4.1.1.33	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Terpenoid backbone biosynthesis	00900	84%
Blast2go	Biosynthesis of terpenoids and steroids	01062	84%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	isoprenoid biosynthetic process	GO:0008299	Biological Process	84%
Blast2go	phosphorylation	GO:0016310	Biological Process	84%
Blast2go	kinase activity	GO:0016301	Molecular Function	84%
Blast2go	diphosphomevalonate decarboxylase activity	GO:0004163	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTF0

Fln msg:

Fln protein: MGEELQTWILMVTARAPTNIAVIKYWGKRDEKLILPINDSISFTLDPDHLSATTTVAVSPSFTSDRMWLNGKEVSLGGERYQNCLREIRSRGNDVVDEKKGIVIRKEDWQRLHLHIASYNNFPTAAGLASSAAGFACLVYGLAKLMDVKEKYQGELSAIARRGSGSACRSLYGGVVKWMMGKETDGSDSIAVQLATEKHWEDLVILIAVVSSRQKETSSTTGMSQSVETSELLRHRSQEVVPKRILQMEEAIANHDFGSFAKTTCADSNQFHAVCLDTSPPIFYMNDTSHRIINCIERWNRSEGTPQVAYTFDAGPNAVMYAPNRKVAGHLLQRLLFYFPPDSSKTLSSYVIGDTSILGEIGVDSMKDVESLTAPPELKSESSSSTFPGSIDYFICTRPGKGPILFRNEDQALLNPKTGFPL*

Protein Length: 424

Fln nts: CTAATCTTTCAAGTTGACAGTGCAGTCCAAATCGCTGGCTCCTTATCCTGCTGCTATAAAAACATTTCTTTCCCACTGGCAAGTCCACCAACGATGACGGACTTCGGATGCCAATATTGACTCCTAATTTGATGCTTGTATCTGGTCATTGTCCAATTCCATTTTTTAAGATTGTAGGTCTGCAATTTTCAACTTTGGCGTACCACGTGCATTTGTTGAGCTGGACTTGACCATTAGATGTTTGCTCTTGAGAAATCTCACGAGTTTGTGGCCCAGAACAGTTTTTTCAATTCCTTTTATAATCCACTCTCCTCTGAAGTTAGTGTCTACAGAGTACCCAAGTACTCTTTATAAACTCTGAATGATTGCTAGCTCAAATAGGCAACGAAGAATTGCTTGTAAACTATTCCTGAGAAGTGGGTTTGTTACACAATTCTCAAATATCATTGATCTTCAGGATTTTGGATCACATCTGAGAACCCAGGT_-_ATGGGAGAAGAGTTGCAGACATGGATATTAATGGTCACTGCTAGAGCTCCTACAAATATAGCAGTAATCAAGTACTGGGGGAAAAGAGATGAAAAGCTGATCCTTCCGATCAATGACAGCATCAGCTTTACTTTGGATCCAGACCATCTGTCAGCCACAACCACTGTAGCAGTTAGCCCATCATTCACATCTGATAGAATGTGGCTCAACGGCAAGGAGGTCTCCCTTGGAGGGGAGAGATATCAGAATTGTCTGAGGGAAATCAGAAGCAGGGGAAATGATGTAGTGGACGAGAAGAAGGGAATTGTTATCAGGAAAGAGGATTGGCAGAGGCTTCACTTGCATATTGCTTCGTATAATAATTTCCCAACTGCAGCTGGCTTGGCTTCTTCTGCTGCTGGATTCGCTTGTCTAGTTTATGGTCTGGCAAAATTAATGGACGTCAAGGAAAAATATCAGGGGGAACTTTCAGCCATTGCCCGCCGAGGTTCAGGGAGTGCATGCCGTAGCCTTTATGGTGGAGTTGTAAAATGGATGATGGGAAAGGAAACCGATGGAAGTGACAGCATTGCTGTTCAGCTTGCAACTGAGAAACATTGGGAGGATCTTGTCATTTTGATTGCTGTGGTAAGCTCACGTCAGAAGGAAACAAGCAGCACAACTGGCATGAGTCAAAGTGTTGAAACTAGTGAACTTCTTCGCCACAGATCACAGGAAGTAGTTCCGAAGCGAATTTTGCAAATGGAAGAAGCAATTGCAAATCATGATTTTGGATCCTTTGCGAAGACTACTTGTGCAGACAGTAACCAGTTCCATGCAGTTTGCCTTGACACATCTCCTCCAATATTCTACATGAATGACACATCACACAGGATTATTAACTGTATTGAAAGATGGAATCGGTCTGAAGGAACTCCACAGGTTGCATACACTTTTGATGCTGGTCCAAATGCAGTAATGTACGCACCTAATAGGAAAGTTGCAGGCCACCTTCTTCAGCGACTGCTTTTCTATTTTCCTCCGGACTCCAGCAAAACATTGTCAAGTTATGTGATAGGCGACACCTCAATACTAGGAGAAATCGGCGTGGACTCAATGAAGGATGTTGAATCCTTGACTGCTCCTCCAGAGCTCAAGAGTGAAAGCAGCAGTTCCACATTTCCAGGCAGTATCGATTACTTCATCTGTACTCGACCTGGAAAAGGTCCTATCCTGTTTAGAAATGAAGATCAAGCTCTTCTTAACCCAAAAACAGGTTTTCCTCTATAG___AGCAGTCAAACCTGAGTTTCTTCTTTTGCTTTAGGGCTACTGTGGACTGGCTAGAAAAGTCATGTAAGTTTACAGTAAACAGGATTCTGGCAATTGTTATGTTAGACCTGAATTTGATTGTCATATTATTTTTGGGTTTTGTACCTCCTTGAAGTATCGAGGTACCTTTTCACTTTCAGAACTGTTATTGTGTTAGCAAATAATTGGTTATGATATCGGTTTGTGACATTTCCCCAAGTCCTGGATTATGGACATT

Fln Alignment:

Contig3358___MGEELQTWILMVTARAPTNIAVIKYWGKRDEKLILPINDSISFTLDPDHLSATTTVAVSPSFTSDRMWLNGKEVSLGGERYQNCLREIRSRGNDVVDEKKGIVIRKEDWQRLHLHIASYNNFPTXXXXXXXXXXXXCLVYGLAKLMDVKEKYQGELSAIARRGSGSACRSLYGGVVKWMMGKETDGSDSIAVQLATEKHWEDLVILIAVVSSRQKETSSTTGMSQSVETSELLRHRSQEVVPKRILQMEEAIANHDFGSFAKTTCADSNQFHAVCLDTSPPIFYMNDTSHRIINCIERWNRSEGTPQVAYTFDAGPNAVMYAPNRKVAGHLLQRLLFYFPPDSSKTLSSYVIGDTSILGEIGVDSMKDVESLTAPPELKSESSSSTFPGSIDYFICTRPGKGPILFRNEDQALLNPKTGFPL
C0PTF0_________________MGEELQRWILMVTARAPTNIAVIKYWGKRDEKLILPINDSISFTLDPDHLSATTTVAVSPSFTSDRMWLNGKEVSLGGERYQNCLREIRSRGNDVVDEKNGIVIRKEDWQRLHLHIASYNNFPTAAGLASSAAGFACLVYSLAKLMDVKEKYQGELTAIARRGSGSACRSLYGGVVKWQMGKETDGSDSIAVQLATEKHWEELVILVAVVSSRQKETSSTTGMSQSVETSELLRHRSQEVVPKRVLQMEEAIANRDFGSFAKITCADSNQFHAVCLDTSPPIFYMNDTSHRIINCVERWNRSEGTPQVAYTFDAGPNAVMYAPNRKVAGLLLQRLLFYFPPDSSKTFSSYVIGDTSILEEIGVNSMKDVESLTAPPELKSESSSSTFPGGIDYFICTRPGKGPILFRNEDQALLNPKTGFPL

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
86	25	75			0.996473
88		75		25	0.996473
89		75	25		0.996473
90	75			25	0.996473
200	33		66		0.997452
201		33		66	0.997452
203		66		33	0.997452
204		66		33	0.997452
369	25		75		0.996473
370	25	75			0.996473
372	75		25		0.996473
373			75	25	0.996473
445	80			20	0.995493
838	14			85	0.993533
989	20		80		0.995493
992		80		20	0.995493
1025	16		83		0.994512
1026		16	83		0.994512
1029		16	66	16	0.988813
1032			80	20	0.995493
1244		87		12	0.992554
1252	85	14			0.993533
1255		85		14	0.993533
1261	14			85	0.993533
1262	14			85	0.993533
1265			88	11	0.923564
1444	10		90		0.90298
1447			90	10	0.90298
1469	87	12			0.992554
1506		25		50	0.995533
1507	25			75	0.996473
1767	40			60	1.0
1770	60			40	1.0
1771	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain