SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3311

Length: 468 nt

UniGene Fasta

>biog3_v1.0_unigene3311
ATTGGTTTGGATGATAACATTCCTCTTTTACAAAACAGTTTAAAGATGGATCCAGCACAGGAGGTCCGAGAGACGTGTGAATTGGCACTCAGAAGATTAGAGCAAAAGAAACATGAATCTGCAGATAAGGAGAGGAGCACAGATGAGAGGTCCCCTTTCCTATCTGTGGATCCTGCAGCACCAGCATCCTCAGAATCTAGTGTGGAGGAACTCAGGAAAGTGCTTTTGGATGAAGAGAAAGGCATGTATGAGCGCTATGCTGCACTGTTTGCACTTCGAAATCGTGGAGGAGCGGAAGCTGTTGATGCTGTTGTGGCGGCTTTACAAGCCCAAAGTGCACTGCTTCGACATGAGGTTGCATACGTTCTAGGGCAATTGCAAGACAAAGCCTCATCAGTCGCACTCTCAGAAACTTTAAGGGATGCTAATGAACACCCCATGGTTCGGCATGAAGCAGCTGAAGCACTT

Ace file of the UniGene biog3_v1.0_unigene3311

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9200	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	deoxyhypusine hydroxylase [Arabidopsis thaliana] sp\|Q94JW0.1\|DOHH_ARATH RecName: Full=Deoxyhypusine hydroxylase; Short=DOHH; AltName: Full=Deoxyhypusine dioxygenase; AltName: Full=Deoxyhypusine monooxygenase gb\|AAK49594.1\|AF372878_1 AT3g58180/F9D24_90 [Ar	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	deoxyhypusine hydroxylase	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	binding	GO:0005488	Molecular Function	81%
Blast2go	lyase activity	GO:0016829	Molecular Function	81%
Blast2go	phycobilisome	GO:0030089	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo-like helical	IPR011989	-	0.0	-
Sma3	PBS lyase HEAT-like repeat	IPR004155	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRS3

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 156 - 317

Fln protein: IGLDDNIPLLQNSLKMDPAQEVRETCELALRRLEQKKHESADKERSTDERSPFLSVDPAAPASSESSVEELRKVLLDEEKGMYERYAALFALRNRGGAEAVDAVVAALQAQSALLRHEVAYVLGQLQDKASSVALSETLRDANEHPMVRHEAAEAL

Protein Length: 157

Fln nts: ATTGGTTTGGATGATAACATTCCTCTTTTACAAAACAGTTTAAAGATGGATCCAGCACAGGAGGTCCGAGAGACGTGTGAATTGGCACTCAGAAGATTAGAGCAAAAGAAACATGAATCTGCAGATAAGGAGAGGAGCACAGATGAGAGGTCCCCTTTCCTATCTGTGGATCCTGCAGCACCAGCATCCTCAGAATCTAGTGTGGAGGAACTCAGGAAAGTGCTTTTGGATGAAGAGAAAGGCATGTATGAGCGCTATGCTGCACTGTTTGCACTTCGAAATCGTGGAGGAGCGGAAGCTGTTGATGCTGTTGTGGCGGCTTTACAAGCCCAAAGTGCACTGCTTCGACATGAGGTTGCATACGTTCTAGGGCAATTGCAAGACAAAGCCTCATCAGTCGCACTCTCAGAAACTTTAAGGGATGCTAATGAACACCCCATGGTTCGGCATGAAGCAGCTGAAGCACTT

Fln Alignment:

Contig3311___IGLDDNIPLLQNSLKMDPAQEVRETCELALRRLEQKKHESADKERSTDERSPFLXXXXXXXXXXXXXXXXLRKVLLDEEKGMYERYAALFALRNRGGXXXXXXXXXXXXXXXXXXRHEVAYVLGQLQDKASSVALSETLRDANEHPMVRHEAAEAL
A9NRS3_________________IGLDDNIPLLKKCLKKDPAQEVRETCELALRRLEEKKHRSADKESSTAERSPFFSVDPAAPASSESRVEELRKVLLDEEKGMYERYAALFALRNRGGAEAVDAVVAALQAQSALLRHEVAYVLGQLQDKVSSVALSETLRDANEHPMVRHEAAEAL

SNPs (tot: 4)

Position	A %	G %	T %	Probability
219	25	75		0.996473
220		75	25	0.996473
221	75	25		0.996473
222	75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain