SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3298

Length: 810 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3298 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9007	5/8
SustainPine v2.0	sp_v2.0_unigene81133	3/8

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoenolpyruvate carboxykinase [ATP], putative n=1 Tax=Ricinus communis RepID=B9R6Q4_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	phosphoenolpyruvate carboxykinase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoenolpyruvate carboxykinase (ATP).	EC:4.1.1.49	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	83%
Blast2go	Citrate cycle (TCA cycle)	00020	83%
Blast2go	Pyruvate metabolism	00620	83%
Blast2go	Carbon fixation in photosynthetic organisms	00710	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	gluconeogenesis	GO:0006094	Biological Process	83%
Blast2go	phosphorylation	GO:0016310	Biological Process	83%
Blast2go	kinase activity	GO:0016301	Molecular Function	83%
Blast2go	phosphoenolpyruvate carboxykinase (ATP) activity	GO:0004612	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoenolpyruvate carboxykinase, ATP-utilising	IPR001272	-	-
Sma3	Phosphoenolpyruvate carboxykinase, N-terminal	IPR008210	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Phosphoenolpyruvate carboxykinase (ATP), conserved site	IPR015994	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	T %	Probability
296	75	25		0.996473
386	60	40		1.0
398	50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain