SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3261

Length: 735 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3261 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8600	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1421 multi-domain protein	-	-	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	vegetative cell wall protein gp1 -like	-	-	46%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1421	IPR010820	-	0.0	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
196	33			66	0.997452
197	33		66		0.997452
199		66	33		0.997452
234	16			83	0.994512
235	16	83			0.994512
450		85	14		0.993533
451	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain