SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3220

Length: 879 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3220

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4811	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	v-ATPase subunit D [Arabidopsis thaliana]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	atp synthase subunit	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	85%
Blast2go	ATP hydrolysis coupled proton transport	GO:0015991	Biological Process	85%
Blast2go	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	85%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	85%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	85%
Blast2go	proton-transporting two-sector ATPase complex, catalytic domain	GO:0033178	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V1/A1 complex, subunit D	IPR002699	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMT3

Fln msg: Overlapping hits, possible frame ERROR between 532 and 507, your sequence is shorter than subject: 249 - 269

Fln protein: RLVGATRGHTLLKKKSDALTMQFRQILKRIVATKESMGEIMKASAFALTEAKYTAGENIKHIVRENVDSATIRVRAKQDNVAGVKLPKFEYFSEAGSGGEGSTGRSNVLTGLARGGQQIQLCRSAYIKAIEVLVELASLQTSFLTLDEAIKATNRRVNALENVVKPRLxxxxxxxxxxELDELEREDFFRLKKIQSYKKRELERQMQSAKDFAEEQVLENFALQKGISMGDAHNLLSMGNEKDEDIIF*

Protein Length: 250

Fln nts: GCGCCTGGTGGGGGCAACACGCGGCCACACCCTCCTGAAGAAGAAGAGCGATGCCCTCACAATGCAGTTCCGGCAGATTCTGAAGCGCATCGTGGCCACGAAGGAGTCTATGGGCGAGATCATGAAGGCCTCGGCATTCGCCCTCACGGAGGCCAAGTACACCGCGGGGGAAAACATCAAGCACATCGTCAGGGAGAACGTGGACTCCGCCACGATCAGGGTCAGGGCCAAGCAGGACAACGTGGCCGGCGTCAAACTCCCCAAATTCGAGTACTTTTCGGAGGCGGGCAGCGGCGGGGAAGGATCCACAGGAAGGAGCAACGTTCTCACCGGCCTCGCCCGTGGCGGGCAGCAGATACAGCTCTGCCGATCGGCTTACATAAAGGCCATCGAGGTTCTGGTAGAGCTGGCCTCGTTGCAGACCTCGTTTCTGACACTCGACGAGGCCATCAAGGCCACGAATCGCAGGGTCAATGCGCTCGAGAACGTGGTCAAGCCCAGATTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGCTTGACGAGTTGGAGAGGGAGGATTTCTTCAGACTGAAGAAAATTCAGAGTTATAAGAAGAGGGAGCTCGAGAGACAGATGCAGAGTGCCAAGGATTTTGCCGAAGAGCAGGTTCTGGAGAATTTTGCGCTTCAGAAGGGGATTTCGATGGGCGACGCGCACAATCTGCTGTCTATGGGAAATGAAAAGGATGAGGATATTATTTTCTAGAGAGGTAATTTAGAAAGTTAAAACCCACAAACCATCTGTTCTGCTACAGAATTCTGTGTAATTTTACCCCAATAACTAGCTGAACTTTCTACAGGACCGGAACGTCGGATCTGCAGCAGAAATTTCAGACATT

Fln Alignment:

Contig3220___RLVGATRGHTLLKKKSDALTMQFRQILKRIVATKESMGEIMKASAFALTEAKYTAGENIKHIVRENVDSATIRVRAKQDNVAGVKLPKFEYFXXXXXXXXXXXXXXNVLTGLARGGQQIQLCRSAYIKAIEVLVELASLQTSFLTLDEAIKATNRRVNALENVVKPxxxxxxxxxxxELDELEREDFFRLKKIQSYKKRELERQMQSAKDFAEEQVLENFALQKGISMGDAHNLLSMGNEKDEDIIF
A9NMT3_________________RLVGATRGHTLLKKKSDALTMQFRQILKRIVATKESMGEIMKASAFALTEAKYTAGESIKYIVRENVNSATIRVRAKQDNVAGVKLPKFEYYSEAGNGGEGSTGRSNDLTGLARGGQQVQLCRSAYIKAIEVLVELASLQTSFLTLDEAIKATNRRVNALENVVKPxxxxxxxxxxxELDELEREDFFRLKKIQSYKKRELERQMESAKDFADEQVLENFALQKGISMGDAQNLLSMETEKDEDIIF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
127			75	25	0.996473
129		75		25	0.996473
447	10	90			0.90298
451		90		10	0.90298
530			66	33	1.0
531			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain