SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3209

Length: 975 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3209 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3746	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	ThylakoidFormat domain containing protein	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	chloroplast-localized ptr -binding protein1	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	87%
Blast2go	protein import into chloroplast thylakoid membrane	GO:0045038	Biological Process	87%
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	87%
Blast2go	photosystem II assembly	GO:0010207	Biological Process	87%
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	87%
Blast2go	sugar mediated signaling pathway	GO:0010182	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	plastid outer membrane	GO:0009527	Cellular Component	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	plastid inner membrane	GO:0009528	Cellular Component	87%
Blast2go	stromule	GO:0010319	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II Psp29, biogenesis	IPR017499	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPI7

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 248 - 304

Fln protein: MSGSLASVCPTGFQRFTERTTMLQGIRPSNTICSLRWRTITGHDQLLFTVNINSRSLPKASSSLSVTRCCMSVTASDIPTVADTKSAFIKAYKRPIPSIYNNVIQELIVQQHLMRYKRTYQYDAVFALGFVSVYDQLMDGYPSDGDREAIFRAYIYALKEDPEQYRSDAKKLEEWAGSQDAKSIVEFQSRDGEVEGILKDISERAREKKNFSYSRFFAIGLFRLLERANATDPVVLEKLCAALNISKT

Protein Length: 249

Fln nts: AGCCAATAAGAGCATATCGGATAAGCCTGTGGGCATCAGCGTTCCTCCAAGCATTTCATTGATAGACTGAATTTCTGTCGATACACCTTTCTTGCTTCGATACCTCAAGCTGTCTGTGACTCTACACAGAAATGAACTACTACATTTGATTTAATTGGACTGGAGACAATCAGACAACAAACAGAGATACATATTTGGGTGATAAAAGGAAATTTGATATAGATTGAAC_-_ATGTCAGGGTCCCTGGCATCAGTTTGCCCAACTGGGTTTCAGAGATTCACAGAAAGGACAACAATGCTACAGGGGATTCGCCCATCTAATACTATTTGCAGTCTTCGATGGCGAACAATCACTGGCCACGACCAACTACTGTTTACTGTTAATATAAACAGCCGCTCACTCCCAAAGGCTTCCTCTTCACTATCTGTGACCCGATGCTGCATGTCTGTTACGGCTTCTGACATTCCTACAGTTGCAGATACCAAGTCAGCATTCATAAAAGCATATAAAAGGCCTATTCCCAGCATATACAACAATGTTATACAAGAGTTAATAGTACAGCAACACCTGATGCGTTACAAGAGGACATATCAGTATGATGCAGTATTTGCACTAGGTTTTGTCAGTGTCTATGACCAACTTATGGATGGATACCCCAGTGATGGTGACCGCGAAGCAATCTTCAGAGCGTACATATATGCATTGAAAGAGGATCCTGAACAGTACAGGAGTGATGCCAAAAAGCTGGAAGAATGGGCTGGCTCACAGGATGCAAAGTCTATTGTTGAATTTCAATCTAGAGATGGAGAGGTTGAGGGAATATTGAAAGACATTTCTGAACGAGCGAGGGAAAAGAAAAATTTTAGCTACAGTCGCTTCTTTGCAATTGGATTGTTCCGGCTACTTGAACGGGCAAATGCTACAGATCCTGTTGTGCTGGAGAAGTTATGTGCAGCCTTAAATATAAGCAAGACATT

Fln Alignment:

Contig3209___MSGSLASVCPTGFQRFTERTTMLQGIRPSNTI-CSLRWRTITGHDQLLFTVNINXXXXXXXXXXXSVTRCCMSVTASDIPTVADTKSAFIKAYKRPIPSIYNNVIQELIVQQHLMRYKRTYQYDAVFALGFVSVYDQLMDGYPSDGDREAIFRAYIYALKEDPEQYRSDAKKLEEWAGSQDAKSIVEFQSRDGEVEGILKDISERAREKKNFSYSRFFAIGLFRLLERANATDPVVLEKLCAALNISK
A9NPI7_________________MAGALASVCPTGFRRLTERTTMLQGIRPSNNIFSSLRWRTITGHDQLLLTVNISSRSLPKASSSLSVTRCSMSITASDIPTVAETKSAFLKAYKRPIPSIYNNVIQELIVQQHLMRYKRTYQYDAVFALGFVSVYDQLMDGYPSDGDSEAIFRAYINALKEDPEQYRSDAKKLEEWASSQDAKSIVEFQSRDGEVEGILKDIAERAREKKIFSYSRFFAIGLFRLLERANATDPVVLEKLCGALNISK

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
411	12		87		0.992554
412		12		87	0.992554
413	12		87		0.992554
450		14		85	0.993533
453			85	14	0.993533
506		83	16		0.994512
605	80			20	0.995493
606		80	20		0.995493
607	80			20	0.995493
609	20			80	0.995493
610	80	20			0.995493
611	20		80		0.995493
655	75			25	0.996473
704		80	20		0.995493
721	20		80		0.995493
724	80			20	0.995493
725	80			20	0.995493
799	25		75		0.996473
800	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain