SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3171

Length: 1399 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3171 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7209	7/39
SustainPine v2.0	sp_v2.0_unigene16987	32/39

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF581 domain containing protein	-	-	1.0e-22	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	uncharacterized protein	-	-	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF581	IPR007650	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT09

Fln msg: your sequence is longer than subject: 219 - 166

Fln protein: MLLSFLWGGRLQGGELVFLSGPHFGFRSGKFRGIQRIFCIFFCVGTSVHINKMLLGKRARPTMRRTTSMSSLGSDSCLELNPKEKQRPSQDCSSIKGMTLGETAQGQAVAMGVPIKKGIWWPLNGFGFPRPNRRKNSEPAHFLHACFLCKRRLVPGRDIYMYRGDSAFCSIECRHQQIVLDERKEKRSVIAMKKESVPSNQHQNTSNQGSHSETAAAA*

Protein Length: 220

Fln nts: CCTTCGGTGTAAACGCTTATATGGACTATGTGGTAGTATCCTGATTCTCTGCTCTATTCAATTCAATAGCAATAAGAGGAAGTTGGGTATTGTTTTATCAGAGTCCCATTTACTGTTTTAGGGGCTTTAGGTAAAGTAGTTTGCAAGCTATATATTATTACCTCAGGGTCTCTGGGAGTGTTCAGTATCTGAATAAGTGTTATAGTTGCAGAAATTGGGCTGTTCTTTAATGCCTGCAGAGTTATTTGTTAGGGAATTCTTAATTTGGATGTAGTTTTCTGAATGCCCACATTAGATTTTATCACTGAATCCAATGTGGGCACTCGCAGAAATTTTACTTAAATCACTGCACGGTTTATCAGAGTTTTTGCGGTAGGCTGCGGCAGTGT_-_ATGCTGCTATCGTTTTTGTGGGGCGGGCGTCTGCAAGGCGGAGAACTTGTATTTCTATCTGGTCCTCACTTTGGTTTCAGATCAGGGAAATTCAGAGGAATTCAGAGAATTTTCTGCATCTTTTTTTGTGTGGGTACATCTGTACATATAAACAAGATGCTGCTTGGAAAGCGAGCGAGGCCTACAATGAGAAGAACTACAAGCATGTCATCGCTTGGTTCAGATTCTTGTCTTGAGCTGAATCCCAAAGAGAAGCAGAGACCATCTCAGGATTGCTCCTCAATAAAGGGCATGACCCTAGGAGAGACTGCACAAGGGCAAGCTGTGGCAATGGGTGTACCAATCAAAAAGGGCATTTGGTGGCCATTGAACGGCTTTGGTTTTCCTAGGCCTAATAGAAGAAAGAATTCAGAGCCTGCCCACTTCCTGCATGCGTGTTTTCTCTGCAAACGCCGGCTGGTCCCTGGCAGGGACATCTACATGTACAGGGGTGACAGTGCATTCTGTAGCATTGAATGTCGGCACCAGCAAATTGTTTTAGATGAACGCAAAGAGAAACGCTCTGTGATCGCCATGAAAAAAGAATCTGTGCCCTCAAATCAGCATCAGAACACCAGTAATCAGGGTTCCCATTCTGAGACCGCTGCAGCAGCCTAG___CGCAGATGGTGTTTATGAGGACGCCAAGTAGTCCTTTATGTGCTCTCTATTATTGTTTATTTGATAAGAATGGGTTCAGTGATCTAAACGCTGTAGCAGGGATAAGAATTAAGATCATGCAATCTTTATATGATGCTGTTTATCAGGCGCTTCTGTTGCTGATTGAATATGTAATGGCAGTTAACCTGTTCTTTCATAATTGAGTGTTATGGGTTTTGGCATCTTTACGAATTGGATCTGAGCTGTTATGGCCATGTTTTCCAGTCTCATTATCAAACTTCCTTCCTTTGTACACACAGGCAGTTTTAGCTAACTGCGAAGTGTAAAGAACAAAGGATTGTCGAATCGAAACC

Fln Alignment:

Contig3171___MLLGKRARPTMRRTTSMSSLGSDSCLELNPKEKQRPSQDCSSIKGMTLGETAQGQAVAMGVPIKKGIWWPLNGFGFPRPNRRKNSEPAHFLHACFLCKRRLVPGRDIYMYRGDSAFCSIECRHQQIVLDERKEKRSVIAMKKESVPSNQHQNTSNQGSHSETAAAA
A9NT09_________________MLLGKRARPTMRRTTSMSSLGSDSSLELNPKEKQRPSQDCSSIKGMALGETAQGQTVAMGVPNKKGIWWPLNGFGFPRPNRRKNSEPAHFLHACFLCKRRLVPGRDIYMYRGDSAFCSIECRHQQIVLDERKEKRTVIVMKKESVPSNQHQNSGNQGSHSETAAAA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
163	88			11	0.923564
224		88		11	0.923564
311		33	66		1.0
313			60	40	1.0
314		60		40	1.0
919			33	66	0.997452
920		66		33	0.997452
1113		85	14		0.993533
1171			83	16	0.994512
1195	12			87	0.992554
1196		12		87	0.992554
1197	12	87			0.992554
1199			87	12	0.992554
1225			85	14	0.993533
1278	20	80			0.995493
1280	80			20	0.995493
1352		33		66	0.997452
1354			66	33	0.997452
1355	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain