SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3153

Length: 414 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3153
AATGTAGGGGTTTTGGAGGAATGGCGACAGCAAGTAATATGGATCTGGCGGATGTGCCCTCGCTCGATCTCATGAGCGAGTTGCTGCGCCGAATGAAGTGCTCCAATAAGCCTGAGAAACGACTCATTCTAGTGGGTCCGCCTGGATCAGGGAAAGGTACTCAATCTCCATTTATTAAGGATGAATACTGCTTATGCCACTTGGCCACAGGAGATATGCTAAGAGCTGCAGTGGCTGCCAAGACTCCTTTAGGCATCAAAGCTAAGGAGGCTATGGAGAAGGGGGAGCTCGTCTCTGATGATTTGGTGGTTGGAATTATTGACGAAGCCATAAAAAAACCTTCATGCCAGAAAGGCTTTATTCTTGATGGTTTTCCTCGCACTGTAGTCCAAGCTCAGAAGCTTGATGAAATGC

Ace file of the UniGene biog3_v1.0_unigene3153 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7926	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Adenylate kinase B n=8 Tax=Magnoliophyta RepID=KAD2_ORYSJ	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	adenylate kinase b-like	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylate kinase.	EC:2.7.4.3	-	0.0	93%

Source	KEGGs	Term	Type	Identity
Blast2go	Purine metabolism	00230		93%
Blast2go	Metabolic pathways	01100		93%
Blast2go	Biosynthesis of secondary metabolites	01110		93%
Blast2go		EC:2.7.4.1-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	purine nucleotide metabolic process	GO:0006163	Biological Process	93%
Blast2go	nucleotide biosynthetic process	GO:0009165	Biological Process	93%
Blast2go	nucleotide phosphorylation	GO:0046939	Biological Process	93%
Blast2go	adenylate kinase activity	GO:0004017	Molecular Function	93%
Blast2go	ATP binding	GO:0005524	Molecular Function	93%
Blast2go	nucleoside triphosphate adenylate kinase activity	GO:0046899	Molecular Function	93%
Blast2go	cytoplasm	GO:0005737	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3	Adenylate kinase, subfamily	IPR006259	-	-
Sma3	Adenylate kinase	IPR000850	-	-
Sma3	Adenylate kinase, active site lid domain	IPR007862	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9G6

Fln msg: Distance to subject end: 115 aas, your sequence is shorter than subject: 131 - 246

Fln protein: MATASNMDLADVPSLDLMSELLRRMKCSNKPEKRLILVGPPGSGKGTQSPFIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMEKGELVSDDLVVGIIDEAIKKPSCQKGFILDGFPRTVVQAQKLDEM

Protein Length: 132

Fln nts: AATGTAGGGGTTTTGGAGGA_-_ATGGCGACAGCAAGTAATATGGATCTGGCGGATGTGCCCTCGCTCGATCTCATGAGCGAGTTGCTGCGCCGAATGAAGTGCTCCAATAAGCCTGAGAAACGACTCATTCTAGTGGGTCCGCCTGGATCAGGGAAAGGTACTCAATCTCCATTTATTAAGGATGAATACTGCTTATGCCACTTGGCCACAGGAGATATGCTAAGAGCTGCAGTGGCTGCCAAGACTCCTTTAGGCATCAAAGCTAAGGAGGCTATGGAGAAGGGGGAGCTCGTCTCTGATGATTTGGTGGTTGGAATTATTGACGAAGCCATAAAAAAACCTTCATGCCAGAAAGGCTTTATTCTTGATGGTTTTCCTCGCACTGTAGTCCAAGCTCAGAAGCTTGATGAAATGC

Fln Alignment:

Contig3153___MATASNMDLADVPSLDLMSELLRRMKCSNKPEKRLILVGPPGSGKGTQSPFIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMEKGELVSDDLVVGIIDEAIKKPSCQKGFILDGFPRTVVQAQKLDEM
D5A9G6_________________MATANNVDLAEVPSLDLMSELLRRMKCSNKPDKRLILVGPPGSGKGTQSPLIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMNKGELVSDDLVVGIIDEAIRKPSCQKGFILDGFPRTVVQAQKLDEM

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
140	33	66			0.997452
143	66		33		0.997452
144			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain