SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3139

Length: 452 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3139
TGTCCCAAGCCATATATCGGAGTTTTGCAAAGTTGGAACTACTAAAGGTACTCCAATTTTAATCAATGTTATGCATTATGAGTTCTGAATTTTAATGTTCAATTTATTTTATGTCTGATTTAAGATTTTACTTTTCAATATGTTTATGTAGGTTGCCGAAACTCGTTTTGCTTCCCACACTTTAGTCATAAAGAGGCTTTTGGAGGTCAGACAAGCATTACAGGCAATGGTCATTGACCCTCTTTGGGAATCATGGAGGACTTCCACTTTTGATAGAGGGCAAAAAATCAAGTCCATCATTCTTGATGATGCATGGTGGGGCAAGGTCGAATACCTTCTATGGTTTACTAAACCAATCTTGACCTTGATCAAAACATTTGACACAGATACACCTTGCTTGGGGTAAGTTTATGAAAACATTGATAGTATGTTGGAGATGATAATGAAACATT

Ace file of the UniGene biog3_v1.0_unigene3139 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene58377	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0513700 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0E0X9_ORYSJ	-	-	9.0e-10	48%
FL-Next	tr=Putative uncharacterized protein Sb08g016890; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	44%
Blast2go	hat family dimerisation domain containing protein	-	-	5.53014e-12	65%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: C5YPA4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 92 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 85 - 212

Fln protein: VAETRFASHTLVIKRLLEVRQALQAMVIDPLWESWRTSTFDRGQKIKSIILDDAWWGKVEYLLWFTKPILTLIKTFDTDTPCLG*

Protein Length: 86

Fln nts: TGTCCCAAGCCATATATCGGAGTTTTGCAAAGTTGGAACTACTAAAGGTACTCCAATTTTAATCAATGTTATGCATTATGAGTTCTGAATTTTAATGTTCAATTTATTTTATGTCTGATTTAAGATTTTACTTTTCAATATGTTTATGTAGGTTGCCGAAACTCGTTTTGCTTCCCACACTTTAGTCATAAAGAGGCTTTTGGAGGTCAGACAAGCATTACAGGCAATGGTCATTGACCCTCTTTGGGAATCATGGAGGACTTCCACTTTTGATAGAGGGCAAAAAATCAAGTCCATCATTCTTGATGATGCATGGTGGGGCAAGGTCGAATACCTTCTATGGTTTACTAAACCAATCTTGACCTTGATCAAAACATTTGACACAGATACACCTTGCTTGGGGTAAGTTTATGAAAACATTGATAGTATGTTGGAGATGATAATGAAACATT

Fln Alignment:

Contig3139___KILLFNMF-----M*VAETRFASHTLVIKRLLEVRQALQAMVIDPLWESWRTSTFDR----GQKIKSIILDDAWWGKVEYLLWFTKPILTLIKTFDTDTPCLG*VYENIDSMLEMI
C5YPA4_________________RLSMFNEFSRLKLLSIAETRFASIVCMLKRFVEVKSALQQMVISDKWSVYREVRDDSPTPTAQIFKDLILNDVWWDKVDYILKITSPIYEMIRMTDTDTPCLHLVYEMWDSMIEKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain