SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3119

Length: 1400 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3119

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10751	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	Arsenite transporter-like protein n=1 Tax=Pteris vittata RepID=C0LQ81_PTEVI	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	arsenite transporter	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	sodium ion transport	GO:0006814	Biological Process	82%
Blast2go	bile acid:sodium symporter activity	GO:0008508	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bile acid:sodium symporter	IPR002657	-	0.0	-
Sma3	Arsenical-resistance protein ACR3	IPR004706	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABK5

Fln msg: your sequence is shorter than subject: 417 - 456

Fln protein: LNSDNGIRCRFYRNSGAHVDVDSRRVGEGANLHCRCNPQSYKQEDRVSIILPTGEELICKAEVISDTSKHEKEETSIFQRLSFLDRFLYAWILVDMVLAVAIGYFVKRIKKAFEVAEISSVSLPICIGLWVMMYPVLCKVRYELMGKMLKSRELGRNLVLSVCMNWIIGPALMTGLAWATLPDLPGYRAGVILVGIARCIAMVLIWNELAKGDNQLCAVLVAVNSILQIIFFTPVSLFYLKVVSRGDELQVNPWDVGKSVLLFLGVPLAAGIITRFSLRRAFGNDWYQFKFIPFIGPWALIGLLYTIFVMFSIQAHHIVTNIGEVFRVAVPLILYFGIVFFHPLLLQISENLISPVCYTVIYSIQQQF*TCNRCCSRNLWD*LRASPSCDYWTFN*GTSITSFVYVILALKTRWFK*

Protein Length: 418

Fln nts: TTTGAACAGCGACAATGGAATCCGCTGCAGATTTTACAGGAATTCGGGAGCTCATGTCGACGTGGACAGTCGGCGTGTCGGTGAGGGCGCTAATCTGCATTGCCGCTGTAACCCTCAGAGTTATAAACAAGAAGACAGGGTGTCTATCATTCTCCCGACTGGTGAAGAGCTCATATGCAAGGCTGAAGTAATTTCAGATACCAGTAAACATGAGAAAGAAGAAACGAGCATTTTCCAGCGCCTTTCATTTCTGGATAGGTTCCTGTATGCGTGGATATTGGTTGACATGGTGCTAGCAGTAGCCATTGGGTACTTTGTGAAGCGAATCAAGAAAGCCTTTGAAGTGGCCGAAATTAGTTCAGTGTCACTACCTATATGCATTGGTCTATGGGTTATGATGTACCCAGTTCTATGCAAGGTCCGCTATGAACTTATGGGAAAAATGTTGAAAAGCAGGGAATTGGGTAGAAACTTAGTCCTGAGTGTGTGCATGAACTGGATAATAGGACCAGCTCTTATGACAGGTTTGGCGTGGGCAACACTGCCTGACCTCCCAGGCTATCGTGCTGGTGTTATTTTAGTGGGAATTGCAAGGTGCATTGCCATGGTCCTCATCTGGAATGAACTAGCAAAAGGAGATAACCAACTTTGTGCTGTTCTCGTAGCTGTGAATTCTATTCTGCAGATTATCTTTTTTACTCCTGTATCGCTTTTCTACCTGAAAGTGGTTTCTAGAGGTGATGAGCTACAAGTTAACCCATGGGATGTTGGCAAAAGTGTGCTACTTTTTCTGGGAGTGCCTCTTGCTGCAGGAATTATCACTAGATTTTCTTTGCGGCGTGCCTTTGGAAATGACTGGTACCAATTCAAATTTATACCTTTCATTGGGCCTTGGGCACTTATTGGACTTCTATATACAATCTTTGTGATGTTTTCTATTCAAGCACATCACATAGTTACTAACATTGGGGAGGTTTTCCGTGTTGCGGTCCCTCTAATACTGTACTTTGGAATAGTGTTCTTTCATCCATTGCTTTTGCAGATTTCTGAAAATCTCATATCCCCAGTCTGTTACACAGTCATTTACAGCATCCAGCAACAATTTTGAACTTGCAATCGCTGTTGCAGTAGGAACCTTTGGGATTGACTCAGAGCAAGCCCTAGCTGCGACTATTGGACCTTTAATTGAGGTACCAGTATTACTTCTTTTGTTTATGTCATCCTTGCTCTTAAGACAAGGTGGTTTAAATAA___GTTGCATCTCAGCCTGGCAAGCTGTGTAGCTGCTGGAATAGTTGACTCAAGGTGGTTCAGATAAGTTGTGACTCAGTCTTTTAAGCTTTGTATCTGTTGCAGTCAATGACTTGGTGGTATATAGGATTAGTCGTATATATGCGAAATG

Fln Alignment:

Contig3119___NSDNGIRCRFYRNS--GAHVDVDSRRVGEGANLHCRCNPQSYKQEDRVSIILPTGEELICKAEVISDTSKHEKEETSIFQRLSFLDRFLYAWILVDMVLAVAIGYFVKRIKKAFEVAEISSVSLPICIGLWVMMYPVLCKVRYELMGKMLKSRELGRNLVLSVCMNWIIGPALMTGLAWATLPDLPGYRAGVILVGIARCIAMVLIWNELAKGDNQLCAVLVAVNSILQIIFFTPVSLFYLKVVSRGDELQVNPWDVGKSVLLFLGVPLAAGIITRFSLRRAFGNDWYQFKFIPFIGPWALIGLLYTIFVMFSIQAHHIVTNIGEVFRVAVPLILYFGIVFFHPLLLQISENLISPVCYTVIYSIQQQF*TCNRCCSRNLWD*LRASPSCDYWTFN*GTSITS-------------FVYVILALKTRWF
D5ABK5_________________SNEGGLRCRFYRNNVEGGQLDVAGHRVGDDPHLQCGCSAENFEQGNRVSIVLPTGEEFICNAKVITDSYKHEKEDKSIIRRLSLLDRYLYVWILLDMVLAVVIGYYVKGIKKALEVAEIASVSLPICIGLWVMMYPVLCKVRYELVGKMVTSWELGRNILLSMFMNWIIGPALMTGLAWATLPDLPGYRAGVILVGIARCIAMVLIWNDLAKGDDQLCAVLVAVNSILQIIFYTPLALFYLKVVSRGEGIDVNTWDVAKSVLLFLGVPLAAGIITTFSLRRAFGNRWYQDKFIPFIGPWALIGLLYTIFVMFSIQADHIISHIGQVVRVAVPLLLYFGIVFFS----SITACRFLKIPYS--QSVTQSF-----TASSNNFE-LAIAVAIGSFGIDSEQALAATIGPLIEVPVLLLLVYVVLALKTKWF

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
167			66	33	0.997452
170		66		33	0.997452
182	20		80		0.995493
183	20	80			0.995493
186	80			20	0.995493
305	20	80			0.995493
360	25			75	0.996473
364			75	25	0.996473
938	16	83			0.994512
939		16		83	0.994512
1144	33		66		0.997452
1145		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain