SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3095

Length: 1699 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3095

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16166	48/65
SustainPine v2.0	sp_v2.0_unigene61110	17/65

Source	Descriptions	Term	Type	Identity
AutoFact	oligosaccharyltransferase complex subunit beta [Arabidopsis thaliana] gb\|AAL16268.1\|AF428338_1 AT5g66680/MSN2_7 [Arabidopsis thaliana] gb\|AAN12926.1\| putative dolichyl-di-phosphooligosaccharide glycotransferase (oligosaccharyltransferase) [Arabidopsis tha	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	protein N-linked glycosylation via asparagine	GO:0018279	Biological Process	85%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	85%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	85%
Blast2go	plant-type cell wall organization	GO:0009664	Biological Process	85%
Blast2go	transferase activity	GO:0016740	Molecular Function	85%
Blast2go	nucleolus	GO:0005730	Cellular Component	85%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	85%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	85%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligosaccharyl transferase complex, subunit Wbp1	IPR005013	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUT4

Fln msg:

Fln protein: MAPTIRLFTLSILFLFPIFSLGFSPESPTDRHILVLVDDLAIKSSHSIFFKTLTDRGFDLDFKLAHDPKLALQRYGQYLYDGLILFAPSVDNLGGSLDLSAILDFVDSGHDLILAADTTSSDLIRDIAADCGVDFDEDLGALVIDHTSYAVSKTDSDHTLIVSDDVIDSKVILGEKKLEAPVLFRGIAHSLNPANSLVLKVLSASSSAYSANPKADLSSPPALIGSSISLVSVVQARNNARVLISGSLDLFSNKFFKSPVKKFGSSVEHAKSGNEQFVSELSKWVFHERGHLKAVNVQHHKVGETFEPAMYRITDHLEYSVEIYEWTGKDWKPYIADDVQVQFYMMSPYVLKTLSHDNKGLYSVSFQVPDVYGVFQFKIEYQRVGYTSLSLSKQIPVRPFRHNEYERFIKAAYPYYGGAFSMMTGFFIFGLFFLYHK*

Protein Length: 439

Fln nts: AATGTATGATAAAGTGACGACTATTCGCACAAGTGAAGGGAGGCGGAGAAAACCCTGTGTAAACCCTGTTTTCTGTAACA_-_ATGGCTCCGACCATCCGACTGTTTACATTATCAATACTATTTCTGTTCCCCATTTTTTCACTTGGGTTTTCTCCCGAGAGTCCGACGGATCGGCACATTCTCGTGCTCGTGGACGATCTAGCCATCAAGTCATCTCATTCAATTTTCTTCAAGACACTCACAGATCGCGGTTTCGATCTCGACTTCAAGCTCGCACATGATCCCAAGCTCGCGCTTCAGAGATACGGCCAGTACTTGTACGATGGACTCATTCTCTTTGCCCCTTCTGTTGACAATCTGGGGGGCTCATTGGATTTGTCTGCAATTTTGGACTTTGTTGACTCCGGCCATGATTTGATTCTTGCTGCTGACACTACCAGCTCTGATCTCATTCGTGATATCGCTGCTGACTGCGGGGTTGATTTTGATGAAGACCTGGGTGCTTTGGTTATTGATCACACTAGCTATGCTGTTTCGAAAACTGACAGTGATCATACTTTGATTGTGAGTGACGATGTAATCGATTCCAAGGTTATTTTGGGAGAGAAAAAGCTCGAGGCTCCCGTGCTTTTCCGAGGGATTGCTCATTCTTTAAATCCTGCAAACAGCCTGGTGCTGAAAGTGCTATCTGCTTCATCTTCTGCATACTCTGCAAATCCCAAAGCTGATCTATCTAGTCCTCCAGCACTGATAGGATCTTCTATTTCCTTGGTGTCAGTTGTGCAGGCTAGAAATAATGCTCGGGTTCTTATTTCTGGATCCCTTGATTTATTTAGCAACAAGTTTTTCAAATCGCCTGTTAAAAAGTTTGGCAGTTCAGTTGAGCATGCAAAAAGTGGCAATGAGCAGTTTGTGTCTGAATTAAGCAAGTGGGTTTTCCATGAAAGGGGTCATCTTAAGGCTGTAAATGTTCAGCATCATAAAGTTGGGGAGACTTTTGAACCTGCTATGTATCGAATCACTGATCACCTGGAATACTCCGTTGAAATTTATGAATGGACTGGAAAGGATTGGAAGCCTTACATTGCAGATGACGTGCAAGTGCAGTTTTACATGATGAGTCCTTATGTTCTGAAGACGTTGTCACATGACAATAAAGGATTATACTCTGTTTCGTTCCAAGTTCCTGACGTTTATGGTGTTTTCCAATTTAAAATTGAGTATCAAAGGGTTGGTTACACAAGTCTCTCTCTGAGCAAGCAGATTCCTGTAAGGCCTTTCAGGCACAACGAATATGAAAGGTTCATTAAAGCTGCCTATCCATATTATGGAGGTGCATTTTCCATGATGACAGGTTTCTTTATTTTTGGTTTGTTCTTCTTATATCATAAATAA___AGCAAGGTGATAGAAAGGGCTCTGTACTAGAATGCGGGTTACTGGTAAAAGAAGCATAGAGAGTTATGAGGGGGATGTTGAGCAACATTATAATTCTTAATGTTGGACCATAGGCTAAACTGGCCATTGCTTTTATATGCATCATCTAAATTTGCCCTAGATGAATTTTCTGTTCAGTGTAATTTGAATTTCCTCCAATTCTGGGACAAGCTGAATCTGCTTGAGAAATGAAATTTTGGCAGGATAGTATTCTATTTGATCTCATGTATGATTACATTTTCATTTGTGAAAATACATCTGCTTGA

Fln Alignment:

Contig3095___MAPTIRXXXXXXXXXXXXXXXXXXXESPTDRHILVLVDDLAIKSSHSIFFKTLTDRGFDLDFKLAHDPKLALQRYGQYLYDGLILFAPSVDNLGGSLDLSAILDFVDSGHDLILAADTTSSDLIRDIAADCGVDFDEDLGALVIDHTSYAVSKTDSDHTLIVSDDVIDSKVILGEKKLEAPVLFRGIAHSLNPXXXXXXXXXXXXXXXXXXXXXXDLSSPPAXXXXXXXXXXXXQARNNARVLISGSLDLFSNKFFKSPVKKFGSSVEHAKSGNEQFVSELSKWVFHERGHLKAVNVQHHKVGETFEPAMYRITDHLEYSVEIYEWTGKDWKPYIADDVQVQFYMMSPYVLKTLSHDNKGLYSVSFQVPDVYGVFQFKIEYQRVGYTSLSLSKQIPVRPFRHNEYERFIKAAYPYYGGAFSMMTGFFIFGLFFLYHK
A9NUT4_________________MAATIRLFTLSVLFLFPIFSLGFSPESPTDRHILVLVDDLAIKSSHSIFFKTLTDRGFDLDFKLAHDPKLALQRYGQYLYDGLILFAPSVDHLGGSLDLSAILDFVDSGHDLILAADTTTSDLIRDIAADCGVDFDEDLGALVIDHTSYAVSKTDSDHTLIVSDDAINSKVILGGKKLEAPVLFRGIAHSLNPANSLVLKVLSASPSAYSANPKADLSSPPALIGSSISLVSVVQARNNARVLISGSLDLFSNKFFKSPVKRFGSSVEHAKSGNEQFVSELSKWVFHERGHLKAVNVQHHKVGETFEPAMYRITDNLEYSVEIYEWTGKDWKPYIADDVQVQFYMMSPYVLKTLSHDNKGLYSVSFQVPDVYGVFQFKIEYQRVGYTSLSLSKQIPVRPFRHNEYERFIKAAYPYYGGTFSMMTGFFIFGLFFLYHK

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
374	33			66	0.997452
375	33			66	0.997452
437	25	75			0.996473
439			75	25	0.996473
440		75	25		0.996473
453	20	80			0.995493
454	20		80		0.995493
556		80		20	0.995493
597	20			80	0.995493
598	20			80	0.995493
599			80	20	0.995493
601			80	20	0.995493
696		20		80	0.999996
801		90		10	0.90298
813	11			88	0.923564
815	10			90	0.90298
817			88	11	0.923564
818	88		11		0.923564
838	87			12	0.992554
839		87		12	0.992554
842		14	85		0.993533
843	14			85	0.993533
865	83	16			0.994512
866	16	16	66		0.988813
867	16			83	0.994512
892	60		40		1.0
895	16		83		0.994512
898			83	16	0.994512
938	16	83			0.994512
942			83	16	0.994512
974	20		80		0.995493
978		80		20	0.995493
1139	14		85		0.993533
1260		83		16	0.994512
1290	16		83		0.994512
1291	83	16			0.994512
1393	75		25		1.0
1394	75			25	1.0
1471	12		87		0.992554
1489		14		85	0.993533
1490	14	85			0.993533
1532		14		85	0.993533
1533	14		85		0.993533
1534		57		42	1.0
1649	20			80	0.995493
1651	25			75	0.996473
1652	25	25	50		0.995533
1654	25			75	0.996473
1655		75		25	0.996473
1656			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain