SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3090

Length: 415 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3090
TGACATCCTGAGTGAATGAAAAATGGCAAAATAAGGCCAGAGTTCGCTAGATCTGTCCTTCCACTGCCTTACCTCTCGATCTGATCACATCAGAGGCGCGATGGCCACAAAACTGATAAAGCTGGAACTTTTGTACGGCTCAATGGGGAAGAGGATCGTGGTCCGGACAATTTTCTTTGCAATGGCCCTGGCCGCAATGCCAGTTCTTTACGTTGTCCAAGATCCCTCACCATGTGACCTCTCGGACTATCCGGATGACTGCATCGTTAATTTCAGGAGCAACCCAAAATTGCCGTTCCGGAGGATCTCATTTCTTTCCTTCTCCAACAACACCAAACACCCCGAGGTATCCAAGACTGATTCCCTCTACAAACCCAGACCCTCTGTGCGTCTAAGGGATCGAATCCCACGCCCC

Ace file of the UniGene biog3_v1.0_unigene3090 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1145	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	methyltransferase [Arabidopsis thaliana] emb\|CAB82287.1\| putative protein [Arabidopsis thaliana] gb\|AAL07072.1\| unknown protein [Arabidopsis thaliana] gb\|AAN13203.1\| unknown protein [Arabidopsis thaliana] gb\|AAN60352.1\| unknown [Arabidopsis thaliana] gb\|A	-	-	2.0e-38	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	89%
Blast2go	Tetracycline biosynthesis	00253	89%
Blast2go	Histidine metabolism	00340	89%
Blast2go	Tyrosine metabolism	00350	89%
Blast2go	Phenylalanine metabolism	00360	89%
Blast2go	Tryptophan metabolism	00380	89%
Blast2go	Benzoxazinoid biosynthesis	00402	89%
Blast2go	Selenocompound metabolism	00450	89%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	89%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	89%
Blast2go	Methane metabolism	00680	89%
Blast2go	Porphyrin and chlorophyll metabolism	00860	89%
Blast2go	Carotenoid biosynthesis	00906	89%
Blast2go	Phenylpropanoid biosynthesis	00940	89%
Blast2go	Flavonoid biosynthesis	00941	89%
Blast2go	Anthocyanin biosynthesis	00942	89%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	89%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	89%
Blast2go	Insect hormone biosynthesis	00981	89%
Blast2go	Biosynthesis of type II polyketide products	01057	89%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	methylation	GO:0032259	Biological Process	0.0	89%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Methyltransferase type 11	IPR013216	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQR4

Fln msg: Distance to subject end: 431 aas, your sequence is shorter than subject: 105 - 528

Fln protein: MATKLIKLELLYGSMGKRIVVRTIFFAMALAAMPVLYVVQDPSPCDLSDYPDDCIVNFRSNPKLPFRRISFLSFSNNTKHPEVSKTDSLYKPRPSVRLRDRIPRP

Protein Length: 106

Fln nts: TGACATCCTGAGTGAATGAAAAATGGCAAAATAAGGCCAGAGTTCGCTAGATCTGTCCTTCCACTGCCTTACCTCTCGATCTGATCACATCAGAGGCGCG_-_ATGGCCACAAAACTGATAAAGCTGGAACTTTTGTACGGCTCAATGGGGAAGAGGATCGTGGTCCGGACAATTTTCTTTGCAATGGCCCTGGCCGCAATGCCAGTTCTTTACGTTGTCCAAGATCCCTCACCATGTGACCTCTCGGACTATCCGGATGACTGCATCGTTAATTTCAGGAGCAACCCAAAATTGCCGTTCCGGAGGATCTCATTTCTTTCCTTCTCCAACAACACCAAACACCCCGAGGTATCCAAGACTGATTCCCTCTACAAACCCAGACCCTCTGTGCGTCTAAGGGATCGAATCCCACGCCCC

Fln Alignment:

Contig3090___MATKLIKLELLYGSMGKRIVVRTIFFAMALAAMPVLYVVQDPSPC-DLSDYPDDCIVNFRSNPKLPFRRISFLSFSNNTKHPEVSKTDSLYKPRPSVRL
B8LQR4_________________MAAKLLKLELIYGCMGKKLMLRTLFFAIAQAAVSVLYAVHDAAPCVYISDCPDDFMVDF-DRPRWPLIRRNSLQNVRDQARPEISE--------PNVRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain