SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3087

Length: 1076 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3087

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6543	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	cellulose synthase 6 [Populus tremuloides]	-	-	86%
FL-Next	tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	80%
Blast2go	cellulose synthase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	92%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	92%
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	92%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	92%
Blast2go	integral to membrane	GO:0016021	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4VWW7

Fln msg: Overlapping hits, possible frame ERROR between 1015 and 991, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 43 aas, your sequence is shorter than subject: 358 - 1096

Fln protein: M*KKKKSKRSDASLPIFNSEDIEVVEGVDSEKLAFISQIKLEKKFGQSPVFVASTLLENGGVPQNASPASLLKEAIHVISCGYEDKTDWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYCIPPRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPVWYGYGGGLKWLERLSYINATVYPWTSIPLVAYCTLPAICLLTGKFIIPELSNIASLWFLALFICIFTTGILEMRWSGVPIDDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDDDDFSELYAFKWTTLLIPPTTLLIVNLIGVVAGVSNAINNGYESxxxxxxxxxxAFWVIVHLYPFLKGLMGRT

Protein Length: 359

Fln nts: AATGTAGAAGAAGAAGAAATCCAAGCGCAGTGACGCCAGTCTTCCTATTTTCAATTCAGAGGACATAGAAGTAGTAGAAGGAGTTGACAGTGAAAAGTTAGCTTTCATATCTCAGATTAAATTGGAAAAGAAATTTGGACAGTCCCCTGTCTTTGTTGCCTCTACTCTTCTTGAGAATGGTGGTGTACCACAAAATGCTAGTCCTGCTTCACTTCTAAAAGAAGCCATTCATGTTATTAGCTGTGGCTATGAAGATAAAACAGACTGGGGAAAGGAGGTTGGATGGATTTATGGTTCGGTTACAGAGGATATATTGACAGGCTTCAAAATGCATTGCCATGGATGGCGGTCTATTTATTGTATTCCTCCAAGGCCAGCATTCAAAGGGTCTGCTCCAATTAATCTCTCAGATCGTCTACACCAAGTTTTGCGTTGGGCTCTTGGATCAGTTGAAATTTTCCTGAGCAGACACTGTCCTGTTTGGTATGGATATGGAGGGGGTCTGAAATGGTTGGAGAGGCTGTCTTATATAAATGCAACCGTATACCCATGGACATCCATACCTCTGGTGGCATACTGTACCTTGCCAGCTATATGTTTGCTTACAGGAAAATTCATTATTCCAGAGCTCAGTAATATAGCGAGTCTTTGGTTTCTTGCCCTCTTTATCTGTATCTTCACAACTGGCATCCTAGAGATGCGGTGGAGTGGTGTTCCAATTGATGACTGGTGGAGAAACGAACAATTTTGGGTGATTGGAGGTGTGTCTGCACATTTGTTTGCTGTTTTCCAAGGGTTGTTGAAAGTTCTTGCTGGTGTTGATACAAATTTTACTGTGACATCAAAAGCTGGGGATGATGATGATTTTTCAGAGCTATATGCATTTAAGTGGACAACCCTATTGATTCCCCCCACAACACTACTTATAGTGAACCTAATTGGAGTTGTTGCTGGGGTATCTAATGCCATTAATAATGGATATGAGTCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCCTTCTGGGTGATTGTGCATTTGTATCCTTTCCTAAAAGGTTTGATGGGGAGGACATT

Fln Alignment:

Contig3087___SDASLPIFNS-EDIEV-VEGVDSEKLAFISQIKLEKKFGQSPVFVASTLLENGGVPQNASPASLLKEAIHVISCGYEDKTDWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYCIPPRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPVWYGYGGGLKWLERLSYINATVYPWTSIPLVAYCTLPAICLLTGKFIIPELSNIASLWFLALFICIFTTGILEMRWSGVPIDDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDD-DDFSELYAFKWXXXXXXXXXXXXVNLIGVVAGVSNAINNGYESWxxxxxxxxFAFWVIVHLYPFLKGLMGR
Q4VWW7_________________TDSTVPIFSSLEDIEGGVEGFDDEKSPLVFQKSLEKKFGQSLVFVASTQMENGGVPQSATPADLLKEAIHVISCGYEDKSDWGKEIGWIYGSVTEDILTGFKMHARGWRSIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYTGRLKWLERLAYINTTVYPITSIPLLAYCTLPAICLLTGKFIIPEISTLASLWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGVDTNFTVTSKASDEGGDFAELYIIKWTALLIPPTTLLIINIVGVVAGISYAISTGYRSWxxxxxxxxFAFWVIVHLYPFLKGLMGR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
183	33		66		0.997452
184		33		66	0.997452
185	33		66		0.997452
187	66			33	0.997452
896	85			14	0.993533
897		83		16	0.994512

SSRs (tot: 2)

Start position	End position	Sequence	Length
6	18	AGA AGA AGA AGA A	13
854	865	GAT GAT GAT GAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain