SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3073

Length: 418 nt

UniGene Fasta

>biog3_v1.0_unigene3073
AATGTATGCCGAGTTACTCGATTCCAGCAGAGCTAGAAATTGAAGCATATCCTGTATTAGATGAATTGACTTCAAAGATCAGCACGCTAAACTTAGAGCGTGTTCGGAGACTGAAAAGTAGGCTTGTCGCATTGACTCGCAGGGTTCAAAAGGTCCGAGATGAGATAGAGCAGCTCATGGATGATGATGGAGATATGGCTGAAATGTATCTAACTGAGAAAAAGGAGCGAATGGAGGCTGCTTTTTATAGAGATCAATCTTTATTTGGTTACAATTCTGTTGGAACTGGGGCGTCAGTTTCAGCCCCAGTTTCTCCCATAAGTTCTCCACCTGATTCTCGGAAGTTGGAAAAAACTCTAAGCTTAGCACGAAGCAGGCATGAAAGTATGAAGGATTCCGAAAACAATGATGAAACATT

Ace file of the UniGene biog3_v1.0_unigene3073

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3895	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Magnesium transporter n=3 Tax=Malpighiales RepID=B9GVM0_POPTR	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	magnesium transporter mrs2-1	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	magnesium ion transport	GO:0015693	Biological Process	82%
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	magnesium ion transmembrane transporter activity	GO:0015095	Molecular Function	82%
Blast2go	vacuole	GO:0005773	Cellular Component	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMA9

Fln msg: Distance to subject end: 115 aas, your sequence is shorter than subject: 138 - 467

Fln protein: CMPSYSIPAELEIEAYPVLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKERMEAAFYRDQSLFGYNSVGTGASVSAPVSPISSPPDSRKLEKTLSLARSRHESMKDSENNDET

Protein Length: 139

Fln nts: AATGTATGCCGAGTTACTCGATTCCAGCAGAGCTAGAAATTGAAGCATATCCTGTATTAGATGAATTGACTTCAAAGATCAGCACGCTAAACTTAGAGCGTGTTCGGAGACTGAAAAGTAGGCTTGTCGCATTGACTCGCAGGGTTCAAAAGGTCCGAGATGAGATAGAGCAGCTCATGGATGATGATGGAGATATGGCTGAAATGTATCTAACTGAGAAAAAGGAGCGAATGGAGGCTGCTTTTTATAGAGATCAATCTTTATTTGGTTACAATTCTGTTGGAACTGGGGCGTCAGTTTCAGCCCCAGTTTCTCCCATAAGTTCTCCACCTGATTCTCGGAAGTTGGAAAAAACTCTAAGCTTAGCACGAAGCAGGCATGAAAGTATGAAGGATTCCGAAAACAATGATGAAACATT

Fln Alignment:

Contig3073___AELEIEAYPVLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKERMEAAFYRDQSLFGYNSVGTGXXXXXXXXXXXXXXXXRKLEKTLSLARSRHESMKDSENNDE
B8LMA9_________________AELEIEAYPVLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKERMEASFYRDQSLFGYSSIGTGASVSAPVSPICSPTDSRKLEKTLSLARSRHESMKDSENNDE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
343	66	33			0.997452
344	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain