SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3032

Length: 1068 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3032 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23548	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	poly(A)-binding protein [Daucus carota]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	protein	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Polyadenylate-binding protein/Hyperplastic disc protein	IPR002004	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Transferase	IPR003480	-	-
Sma3	Polyadenylate binding protein, human types 1, 2, 3, 4	IPR006515	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, puromycin-sensitive aminopeptidase	IPR015568	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9S1

Fln msg: your sequence is shorter than subject: 211 - 313

Fln protein: MYQQQLLPGIRPGMAQMPNFLLPFHLQRQGQQGQRIGGRRGGTQQQLQQQQQQQQLLQRNANQGYRYMHNTRNGPDPSLVPQALMGTMMPMPLDVAGMPVGNAETTRPQPVPITALASALASANPEQQRAMLGEQLFPLVDQLEHDHAGKVTGMLLEMDQTEVLHLIESPDALKAKIQEAMDVLRLAQAANVASQTEQLSSLSLNEPLGS*

Protein Length: 212

Fln nts: AATGTATCAGCAGCAACTACTACCTGGCATTCGTCCTGGAATGGCTCAGATGCCAAACTTTTTGCTTCCTTTTCATCTCCAGAGACAAGGTCAACAAGGACAACGGATAGGTGGAAGGCGAGGTGGTACACAGCAACAATTGCAGCAACAGCAGCAGCAGCAGCAGCTACTTCAGAGAAATGCAAACCAAGGCTACCGTTACATGCATAATACACGAAATGGACCAGATCCATCATTAGTACCACAGGCTCTAATGGGTACAATGATGCCCATGCCTCTTGATGTTGCTGGCATGCCAGTTGGTAATGCTGAGACAACCAGGCCTCAACCTGTGCCAATTACAGCCCTTGCTTCTGCATTAGCTTCTGCAAATCCAGAGCAGCAGCGAGCGATGCTTGGGGAACAGCTCTTCCCTCTTGTGGATCAGCTGGAACATGATCATGCTGGCAAAGTAACAGGAATGCTATTAGAGATGGATCAGACAGAAGTCCTGCACCTAATTGAATCTCCTGATGCTTTAAAAGCCAAAATTCAAGAAGCAATGGATGTTCTCCGCTTGGCTCAGGCTGCAAATGTTGCAAGCCAAACTGAGCAACTTTCTTCACTGTCATTAAATGAGCCTCTTGGTTCATGA___GGCCTCAATTTTCCTGAAAGACACTGTAGTTCAGTTGTTGGAACTAGTTTGTTTACACCAGAGTTTTGATTGTGATCTTCTCATGTAGTCCTTGCAGATTCTAGTGCTTCATTGCGGTCCACCTAACTCGCCCAGTTTTTTGGGAGGGCTCGCGCTATATCTATTTTTTCAGTGTTGCAAGGTATTGCTGATTCATCTTACGAATGGTCTCACTGCTGCTAACTGTCGACTGCATTGGCATGTGGTGGCAAAGCCAAATTTTAGGGCTTGAGACAGGAGTGTATCACCTTTGCGTCATACACACTAGAAAGTCTTTTCTTTCCTGATTTGTTTTCCAAGGTTTGGGCAACTGTTTCTCTAGTTAGGCATTTTAGTCTGAATTAATAATTATATTATTTGCTTGAGAAGACTTAAACCGCATTCTAGATGCTTCT

Fln Alignment:

Contig3032___YQQQLLPGIRPGMAQMPNFLLPF-HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNANQGYRYMHNTRNGPDPSLVP-QALMGTMMPMPLDVAGMPVGNAETTRPQPVPITALASALASANPEQQRAMLGEQLFPLVDQLEHDHAGKVTGMLLEMDQTEVLHLIESPDALKAKIQEAMDVLRLAQAANVASQTEQLSSLSLNEPLGS
D5A9S1_________________YQQQLIPGMRPGSAPIPNFYLPLMQAQQGQRPGGRRGGVAPIQQQPQQQLPLLQQQMLPRGNRVYRYPP----GRNVNEIPLSGVAGGMHPLPLDMGGLPLRAAETTISQPIPIGALASALANATPEQQRTMLGESLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVTQAQ-ANPAEQLAALSLNETLVS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
295	33	66			0.997452
452	75			25	0.996473
881	25		75		0.996473
883	25	75			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
902	920	GCT GCT GCT GCT GCT GCT G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain