SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2902

Length: 225 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2902
AATGTCTGTCTGTCTTGAGGTTGACAGGCAAAGAAACAGATTGTGCACTGCGGAATCCATAGCAGAGGCTAGAGCACTGGCAGACCGGGGTGATTTGACAGGTGCCCAGCTTGTCTTGGGGATCAGGAGAAGGGCTTTGCAGGCATCCCAAGCAGCTCAGGCCGGAGACCAGCTTTGCAGTTCTCTCGAGGCTGAGTTGAAACAGATCCAAGATAGAATGACATT

Ace file of the UniGene biog3_v1.0_unigene2902 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene497	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein binding	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7Z2

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 74 - 350

Fln protein: MSVCLEVDRQRNRLCTAESIAEARALADRGDLTGAQLVLGIRRRALQASQAAQAGDQLCSSLEAELKQIQDRMT

Protein Length: 75

Fln nts: AATGTCTGTCTGTCTTGAGGTTGACAGGCAAAGAAACAGATTGTGCACTGCGGAATCCATAGCAGAGGCTAGAGCACTGGCAGACCGGGGTGATTTGACAGGTGCCCAGCTTGTCTTGGGGATCAGGAGAAGGGCTTTGCAGGCATCCCAAGCAGCTCAGGCCGGAGACCAGCTTTGCAGTTCTCTCGAGGCTGAGTTGAAACAGATCCAAGATAGAATGACATT

Fln Alignment:

Contig2902___VCLEVDRQRNRLCTAESIAEARALADRGDLTGAQLVLGIXXXXXXXXXXXXAGDQLCSSLEAELKQIQDRM
D5A7Z2_________________ICLEVDRQRNRLCTAETIAEARALADRGDLTGAQLVLGIRRRALQASPAAQAGDQLCSSLEAELKQIQDRM

SSRs (tot: 1)

Start position	End position	Sequence	Length
211	223	AGAC AGAC AGAC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain