SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2889

Length: 248 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2889
TGTAGATGAACTTAAACAGGAAGGTTCAAATGATATGTCTGTATCTATTTCCATTTCTGCAGACAGTGACCTCTCTGCAAATTTATTTCGGAAAAGTTGTGATAGTGTTTGCCCATTTCGGACTGGAGAAAGTTGTAAATGGCCAGATACAGTGTGTGCACAGATGGGCAGTCAATTTACAGGATTGCGAGCAAACTATGATGCATTTGATCAGCTTTCGATATATGATTGTTACTTCAAATCACATT

Ace file of the UniGene biog3_v1.0_unigene2889 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene294	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoprotein phosphatase, putative n=1 Tax=Ricinus communis RepID=B9T6R5_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein Sb07g024450; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	72%
Blast2go	myotubularin-related protein 2-like	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphatidylinositol-3-phosphatase.	EC:3.1.3.64	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Inositol phosphate metabolism	00562	71%
Blast2go	Metabolic pathways	01100	71%
Blast2go	Phosphatidylinositol signaling system	04070	71%

Source	GOs	Term	Type	Identity
Blast2go	dephosphorylation	GO:0016311	Biological Process	71%
Blast2go	phosphatidylinositol-3-phosphatase activity	GO:0004438	Molecular Function	71%
Blast2go	plastid	GO:0009536	Cellular Component	71%
Blast2go	phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity	GO:0052629	Biological Process	71%

Source	InterPros	Term	Type	Identity
Sma3	GRAM	IPR004182	-	-
Sma3	Myotubularin-related	IPR010569	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	Myotubularin phosphatase domain	IPR017906	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: C5YNA4

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 82 - 565

Fln protein: VDELKQEGSNDMSVSISISADSDLSANLFRKSCDSVCPFRTGESCKWPDTVCAQMGSQFTGLRANYDAFDQLSIYDCYFKSH

Protein Length: 83

Fln nts: TGTAGATGAACTTAAACAGGAAGGTTCAAATGATATGTCTGTATCTATTTCCATTTCTGCAGACAGTGACCTCTCTGCAAATTTATTTCGGAAAAGTTGTGATAGTGTTTGCCCATTTCGGACTGGAGAAAGTTGTAAATGGCCAGATACAGTGTGTGCACAGATGGGCAGTCAATTTACAGGATTGCGAGCAAACTATGATGCATTTGATCAGCTTTCGATATATGATTGTTACTTCAAATCACATT

Fln Alignment:

Contig2889___CDSVCPFRTGESCKWPDTVCAQMGSQFTGLRANYDAFDQLSIYDCYF
C5YNA4_________________CESLCPFRTREGCRWPDAPCAQLGSQFVGLKANFDAFDRLSIQDCYF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
33	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain