SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2848

Length: 304 nt

UniGene Fasta

>biog3_v1.0_unigene2848
GAGTATAGTTTAGGTTTAACAACCAAAATGGACACAAACCCTATTATGCCGTAAACTCTGGTCCTGAACTCTCGCTGCTGCGAAACTTATTCATCTCGGTTTGTCTTTCTATCATTTCATTTTTCTACAGTATAGAACATATTGCACTCTTCATTCCACAGATCTGCAGGGGCATTCATTGCGTTTAAGGATGGAGTCTCCTGGTCAGAGCAGCAAGAAGAGAAAGAGGAAGAGAACCCTAGTCCAGACAGAATACATTCCACCGCAGAGCGGCTTTGGATGTCCCTTCGTCGGCTACTTTCCT

Ace file of the UniGene biog3_v1.0_unigene2848

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9940	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] gb\|AAK25914.1\|AF360204_1 unknown protein [Arabidopsis thaliana] dbj\|BAB02324.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK64110.1\| unknown protein [Arabidopsis thaliana] gb\|AEE754	-	-	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	dna-directed rna polymerase i subunit rpa49	-	-	51%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	51%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	51%
Blast2go	Pyrimidine metabolism	00240	51%
Blast2go	Metabolic pathways	01100	51%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	51%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	51%
Blast2go	DNA binding	GO:0003677	Molecular Function	51%
Blast2go	nucleus	GO:0005634	Cellular Component	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA polymerase I associated factor, A49-like	IPR009668	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNA5

Fln msg: Distance to subject end: 405 aas, your sequence is shorter than subject: 38 - 443

Fln protein: MESPGQSSKKRKRKRTLVQTEYIPPQSGFGCPFVGYFP

Protein Length: 39

Fln nts: GAGTATAGTTTAGGTTTAACAACCAAAATGGACACAAACCCTATTATGCCGTAAACTCTGGTCCTGAACTCTCGCTGCTGCGAAACTTATTCATCTCGGTTTGTCTTTCTATCATTTCATTTTTCTACAGTATAGAACATATTGCACTCTTCATTCCACAGATCTGCAGGGGCATTCATTGCGTTTAAGG_-_ATGGAGTCTCCTGGTCAGAGCAGCAAGAAGAGAAAGAGGAAGAGAACCCTAGTCCAGACAGAATACATTCCACCGCAGAGCGGCTTTGGATGTCCCTTCGTCGGCTACTTTCCT

Fln Alignment:

Contig2848___MESPGQSSKKRKRKRTLVQTEYIPPQSGFGCPFVGYF
B8LNA5_________________MESSGKSSKKRKRKRTLVQTEYIKPQSGFGCPFVGYF

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
58	25	75			0.996473
59	25			75	0.996473
60			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain