SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2843

Length: 308 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2843
GCTGATCTCATAGGAACTGTGGTGATCCCTGTCCAGAAGGTTTTGACTGGTGACAAGATCGAAGACTGGTTTCCGGTTCTTAATTCCAGTGGTAAGCCTCCTAAGCCCGATTCTGCTTTGAGGTTGTCAATTCAGTTCCGTCCAGCAGAAGCAGAAGCTGAAACCCTGTGCAAAGATAGTGGTGGGGTTCCCAATACTTATTTTCCTCTGCGTAAAGGTGGGATGGTTTCTGTTTATCAGGATGCTCATGTCGTAGACGGCTTACTTCCTAAAATTCCTTTGGACGGCGGAAAGGTGTTTGAACATGG

Ace file of the UniGene biog3_v1.0_unigene2843 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5860	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phospholipase D n=1 Tax=Picea sitchensis RepID=B8LQ49_PICSI	-	-	89%
FL-Next	sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	phospholipase d delta-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phospholipase D.	EC:3.1.4.4	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Glycerophospholipid metabolism	00564	79%
Blast2go	Ether lipid metabolism	00565	79%
Blast2go	Metabolic pathways	01100	79%

Source	GOs	Term	Type	Identity
Blast2go	lipid catabolic process	GO:0016042	Biological Process	79%
Blast2go	phosphatidylcholine metabolic process	GO:0046470	Biological Process	79%
Blast2go	NAPE-specific phospholipase D activity	GO:0070290	Molecular Function	79%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	79%
Blast2go	phospholipase D activity	GO:0004630	Molecular Function	79%
Blast2go	membrane	GO:0016020	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Phospholipase D	IPR015679	-	-
Sma3	Phospholipase D, plant	IPR011402	-	-
Sma3	Phospholipase D/Transphosphatidylase	IPR001736	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ49

Fln msg: Distance to subject end: 624 aas, your sequence is shorter than subject: 102 - 861

Fln protein: ADLIGTVVIPVQKVLTGDKIEDWFPVLNSSGKPPKPDSALRLSIQFRPAEAEAETLCKDSGGVPNTYFPLRKGGMVSVYQDAHVVDGLLPKIPLDGGKVFEH

Protein Length: 103

Fln nts: GCTGATCTCATAGGAACTGTGGTGATCCCTGTCCAGAAGGTTTTGACTGGTGACAAGATCGAAGACTGGTTTCCGGTTCTTAATTCCAGTGGTAAGCCTCCTAAGCCCGATTCTGCTTTGAGGTTGTCAATTCAGTTCCGTCCAGCAGAAGCAGAAGCTGAAACCCTGTGCAAAGATAGTGGTGGGGTTCCCAATACTTATTTTCCTCTGCGTAAAGGTGGGATGGTTTCTGTTTATCAGGATGCTCATGTCGTAGACGGCTTACTTCCTAAAATTCCTTTGGACGGCGGAAAGGTGTTTGAACATGG

Fln Alignment:

Contig2843___ADLIGTVVIPVQKVLTGDKIEDWFPVLNSSGKPPKPDSALRLSIQFRPAEAEAETLCKDSGGVPNTYFPLRKGGMVSVYQDAHVVDGLLPKIPLDGGKVFEH
B8LQ49_________________AELIGTVVIPVQKVSNGDKIEDWFPVLNSYGKPPKPDSALRLSIQFRP--AETEPLRKDGGGVPDTYFPLRKGGMVSVYQDAHVVDGLLPEIRLDGGKVFEH

SNPs (tot: 3)

Position	A %	G %	T %	Probability
101	33	66		0.997452
103		66	33	0.997452
105	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain