SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2791

Length: 816 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2791 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19250	31/31

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acyl-CoA-binding protein, putative n=5 Tax=Oryza sativa RepID=Q75G87_ORYSJ	-	-	2.0e-29	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	acyl- -binding protein	-	-	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyl-CoA-binding protein, ACBP	IPR000582	-	0.0	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
375	80		20		0.995493
376		80		20	0.995493
383	16		83		0.994512
386			83	16	0.994512
471	14			85	0.993533
473			85	14	0.993533
474		85	14		0.993533
487	14		85		0.993533
490	85			14	0.993533
535	10			90	0.90298
537		88	11		0.923564
538		88		11	0.923564
545		88		11	0.923564
783	25	75			0.996473
784	25	75			0.996473
786	25		75		0.996473
787	25	75			0.996473
788	25		75		0.996473
793		75	25		0.996473
795		25	75		0.996473
796	25	75			0.996473
797	25	25	50		0.995533
798	25		25	50	0.995533
799		25		75	0.996473
800			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain