SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2760

Length: 213 nt

UniGene Fasta

>biog3_v1.0_unigene2760
AATGTGGAAATAAAAAAGCTTCTTGATACTCAACTTCAGATCGCATCGATGATGGTCCAGGGAATGAGAGAGTTGAAACAAGGTGTTGGAATGATTGGATGCAATGACCTGGTGGTCAGTCAGAGAGAGTTCGTGCCTCAGCAGCTGGAAGGATGCAATGAGAGATATGTCCCTCCCTCAAATTTTGCAATGGTAGATAAACGAGTTTACAGA

Ace file of the UniGene biog3_v1.0_unigene2760

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4232	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Tyrosine specific protein phosphatase family protein n=2 Tax=Zea mays RepID=B6TFU8_MAIZE	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	tyrosine specific protein phosphatase family protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-tyrosine-phosphatase.	EC:3.1.3.48	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidyl-tyrosine dephosphorylation	GO:0035335	Biological Process	0.0	78%
Blast2go	protein tyrosine phosphatase activity	GO:0004725	Molecular Function	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein-tyrosine phosphatase, SIW14-like	IPR004861	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEE5

Fln msg: Distance to subject end: 135 aas, your sequence is shorter than subject: 71 - 462

Fln protein: NVEIKKLLDTQLQIASMMVQGMRELKQGVGMIGCNDLVVSQREFVPQQLEGCNERYVPPSNFAMVDKRVYR

Protein Length: 72

Fln nts: AATGTGGAAATAAAAAAGCTTCTTGATACTCAACTTCAGATCGCATCGATGATGGTCCAGGGAATGAGAGAGTTGAAACAAGGTGTTGGAATGATTGGATGCAATGACCTGGTGGTCAGTCAGAGAGAGTTCGTGCCTCAGCAGCTGGAAGGATGCAATGAGAGATATGTCCCTCCCTCAAATTTTGCAATGGTAGATAAACGAGTTTACAGA

Fln Alignment:

Contig2760___EIKKLLDTQLQIASMMVQGMRELKQGVGMIGCNDLVVSQREFVPQQLEGCNERYVPPSNFAMVDKRVYR
D5AEE5_________________KMKKLLDTQLEITSILVQNNKMLKRSDGVAAGRSRAMNEAELICRQ-QGGIASFVPPLNFAMVDKGVYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain