SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2758

Length: 477 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2758
AATGTACCAGATATGTGATATGGATGAAAGTAAAGGAATTGAGTTCAAGGAGTTTATTGTCTGTCTAAGTCTTGTATATATTCTGTGGGAGCCTACCAATCCTAATTCTAAATCACGAATTGGGTTGCCACATCTTGAAGCAACTTTTGATACTATTATTGATGCATTCAGATTCTTTGACAAAGATGGTGATGGTTATGTTAGTAAGAAAGAGATAGTCCAAGCTCTAAATGAAGCTTCCCCAGGAGGAAGAGCTGCAGATCAGATTGGCATCAAAAGATTTGAGGAAATGGACTTCGATAAGAATGGAATGATCTCATTCAAAGAGTTTTTATTTGCATTTACACATTGGGTAGGAGTTGAAGTTGACGATGATGACGATGAGTAACTTCAAGCTAGGGGCCATAATGTACCCTTCTACCTAACATGGTTTGTAATACCTTTGGCTTTGCAACTTGAGAAACAAAATCTTACATT

Ace file of the UniGene biog3_v1.0_unigene2758 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5132	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	putative calcium-binding protein CML21 [Arabidopsis thaliana] sp\|Q52K82.1\|CML21_ARATH RecName: Full=Probable calcium-binding protein CML21; AltName: Full=Calmodulin-like protein 21 gb\|AAY17423.1\| At4g26470 [Arabidopsis thaliana] gb\|AEE85204.1\| putative ca	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	calcium ion binding protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNG7

Fln msg: your sequence is shorter than subject: 129 - 224

Fln protein: MYQICDMDESKGIEFKEFIVCLSLVYILWEPTNPNSKSRIGLPHLEATFDTIIDAFRFFDKDGDGYVSKKEIVQALNEASPGGRAADQIGIKRFEEMDFDKNGMISFKEFLFAFTHWVGVEVDDDDDE*

Protein Length: 130

Fln nts: AATGTACCAGATATGTGATATGGATGAAAGTAAAGGAATTGAGTTCAAGGAGTTTATTGTCTGTCTAAGTCTTGTATATATTCTGTGGGAGCCTACCAATCCTAATTCTAAATCACGAATTGGGTTGCCACATCTTGAAGCAACTTTTGATACTATTATTGATGCATTCAGATTCTTTGACAAAGATGGTGATGGTTATGTTAGTAAGAAAGAGATAGTCCAAGCTCTAAATGAAGCTTCCCCAGGAGGAAGAGCTGCAGATCAGATTGGCATCAAAAGATTTGAGGAAATGGACTTCGATAAGAATGGAATGATCTCATTCAAAGAGTTTTTATTTGCATTTACACATTGGGTAGGAGTTGAAGTTGACGATGATGACGATGAGTAA___CTTCAAGCTAGGGGCCATAATGTACCCTTCTACCTAACATGGTTTGTAATACCTTTGGCTTTGCAACTTGAGAAACAAAATCTTACATT

Fln Alignment:

Contig2758___MYQICDMDESKGIEFKEFIVCLSLVYILWEPTNPNSKSRIGLPHLEATFDTIIDAFRFFDKDGDGYVSKKEIVQALNEASPGGRAADQIGIKRFEEMDFDKNGMISFKEFLFAFTHWVG
A9NNG7_________________LHQICDMDESKGIEFKEFIVLLCLVYILWEPTDPNSKSRIGLPHLEATFDSIIDAFRFFDKDGDGYVSKKEILQALNQASPGGRAADQIGIKRFEEMDFDKNGMISFKEFLFAFTHWVG

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
153	33			66	0.997452
154	33			66	0.997452
157	66			33	0.997452
167	25			75	0.996473
169		75	25		0.996473
170		75		25	0.996473
215		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain